Cow genome map

Conread name: Ss1.1-Utr1-UTR010024A10.5

Conread position: 114-478
Cow position: chr15:1318303-1318670 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 263
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 69, 39

Conread position: 120-483
Cow position: chr15:32493002-32492620 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 35, 48

Conread position: 120-504
Cow position: chr15:41956718-41957104 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 259
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 63, 35

Conread position: 122-476
Cow position: chr15:7892458-7892090 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 250
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 35, 15

Conread position: 123-468
Cow position: chr15:41788205-41787844 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 246
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 36, 285

Conread position: 123-476
Cow position: chr15:6079621-6080000 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 255
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 33, 297

Conread position: 163-480
Cow position: chr15:13074946-13075263 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 34

Conread position: 164-470
Cow position: chr15:4672371-4672684 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 207
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 6, 35

Conread position: 164-473
Cow position: chr15:18331897-18331581 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 214
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 18, 65

Conread position: 164-480
Cow position: chr15:20361151-20360832 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 213
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 64, 162

Conread position: 164-483
Cow position: chr15:35752368-35752041 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 33, 57

Conread position: 167-483
Cow position: chr15:6154981-6154662 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 219
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 24, 61

Conread position: 176-483
Cow position: chr15:4108357-4108044 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 200
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 15

Conread position: 181-453
Cow position: chr15:24296046-24296324 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 187
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 191-483
Cow position: chr15:4386721-4387021 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 203
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 27, 0

Conread position: 191-483
Cow position: chr15:4766157-4766455 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 197
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 13, 135

Conread position: 191-483
Cow position: chr15:19737090-19736793 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 201
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 27, 219

Conread position: 191-483
Cow position: chr15:20411565-20411860 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 199
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 27, 217

Conread position: 197-445
Cow position: chr15:16286972-16286721 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 173
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 41

Conread position: 197-501
Cow position: chr15:4197441-4197747 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 204
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 26

Conread position: 203-476
Cow position: chr15:2646669-2646396 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr15:1773484-1773758 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr15:7563977-7564255 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 190
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 38, 14

Conread position: 203-477
Cow position: chr15:18266795-18266519 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr15:33122358-33122636 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 187
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 36, 14

Conread position: 203-483
Cow position: chr15:5010651-5010367 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 36, 14

Conread position: 215-477
Cow position: chr15:6561579-6561845 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 28, 8

Conread position: 217-465
Cow position: chr15:7838261-7838514 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 13, 0

Conread position: 217-472
Cow position: chr15:1299554-1299294 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 30, 159

Conread position: 217-477
Cow position: chr15:106993-107259 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 22, 0

Conread position: 217-483
Cow position: chr15:2901269-2900996 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 187
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 217-483
Cow position: chr15:7929571-7929838 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 43

Conread position: 217-483
Cow position: chr15:32067615-32067345 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 97

Conread position: 219-483
Cow position: chr15:4923145-4923408 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 79, 18

Conread position: 219-483
Cow position: chr15:42530915-42531179 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 34, 151

Conread position: 220-480
Cow position: chr15:24288475-24288215 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 177
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 111

Conread position: 221-480
Cow position: chr15:2013555-2013820 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 175
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 221-503
Cow position: chr15:25106192-25105907 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 86, 42

Conread position: 223-477
Cow position: chr15:580430-580677 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 10

Conread position: 224-477
Cow position: chr15:58658-58910 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 172
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 78

Conread position: 224-477
Cow position: chr15:21664738-21664483 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 29, 100

Conread position: 224-483
Cow position: chr15:17036656-17036394 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 173
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 133

Conread position: 224-483
Cow position: chr15:25654067-25653802 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 6, 0

Conread position: 224-504
Cow position: chr15:4141735-4141444 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 15, 185

Conread position: 224-504
Cow position: chr15:11293431-11293152 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 193
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 13

Conread position: 225-483
Cow position: chr15:4726204-4726466 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 177
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 12, 44

Conread position: 226-483
Cow position: chr15:35736800-35737060 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 97

Conread position: 229-483
Cow position: chr15:22529742-22529493 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 166, 91

Conread position: 238-477
Cow position: chr15:50122917-50122673 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 240-491
Cow position: chr15:22239970-22239719 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 66

Conread position: 241-501
Cow position: chr15:29866700-29866439 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 167

Conread position: 242-473
Cow position: chr15:29343206-29342972 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 155

Conread position: 242-477
Cow position: chr15:6383131-6382903 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 57, 69

Conread position: 242-477
Cow position: chr15:25205984-25205748 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 57, 119

Conread position: 242-477
Cow position: chr15:35898756-35898518 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 59, 0

Conread position: 242-477
Cow position: chr15:41659188-41659426 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 242-483
Cow position: chr15:17077542-17077299 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 160
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 242-483
Cow position: chr15:48007383-48007622 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 135, 63

Conread position: 242-503
Cow position: chr15:26156857-26157113 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 174
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 81

Conread position: 243-477
Cow position: chr15:50148102-50148346 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 251-465
Cow position: chr15:6485609-6485824 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 71

Conread position: 251-483
Cow position: chr15:9912202-9911968 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 157
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 175

Conread position: 256-483
Cow position: chr15:46553610-46553383 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 41, 50

Conread position: 262-483
Cow position: chr15:14581320-14581099 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 102

Conread position: 262-504
Cow position: chr15:1833598-1833346 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 269-483
Cow position: chr15:20355543-20355329 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 136

Conread position: 298-477
Cow position: chr15:6613799-6613980 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 79, 0

Show alignments to all cow chromosomes.