Cow genome map

Conread name: Ss1.1-Utr1-UTR010024A10.5

Conread position: 116-470
Cow position: chr16:39824468-39824831 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 232
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 101, 292

Conread position: 121-482
Cow position: chr16:707726-707345 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 248
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 290

Conread position: 121-483
Cow position: chr16:13410466-13410856 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 254
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 220

Conread position: 121-501
Cow position: chr16:27299597-27299210 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 259
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 22, 56

Conread position: 122-360
Cow position: chr16:38540387-38540146 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 11

Conread position: 122-481
Cow position: chr16:42060408-42060055 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 234
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 46

Conread position: 127-459
Cow position: chr16:41166117-41165773 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 238
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 28, 63

Conread position: 136-482
Cow position: chr16:49472188-49472560 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 262
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 20, 164

Conread position: 164-457
Cow position: chr16:25342567-25342867 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 33, 0

Conread position: 164-465
Cow position: chr16:40557358-40557042 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 6, 0

Conread position: 164-474
Cow position: chr16:28436873-28436549 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 211
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 10

Conread position: 165-503
Cow position: chr16:52888451-52888789 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 232
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 132, 26

Conread position: 167-480
Cow position: chr16:14665214-14664895 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 208
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 16, 122

Conread position: 167-483
Cow position: chr16:5485327-5485645 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 208
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 211

Conread position: 176-483
Cow position: chr16:5890618-5890922 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 204
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 124, 32

Conread position: 180-483
Cow position: chr16:2482521-2482214 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 209
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 40

Conread position: 191-463
Cow position: chr16:406414-406136 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 194
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 27, 0

Conread position: 191-476
Cow position: chr16:3330562-3330844 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 191
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 135

Conread position: 191-483
Cow position: chr16:10438882-10439180 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 199
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 27, 85

Conread position: 191-483
Cow position: chr16:15185701-15186001 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 200
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 27, 0

Conread position: 191-483
Cow position: chr16:25442254-25442551 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 135

Conread position: 191-483
Cow position: chr16:25456854-25456559 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 27, 94

Conread position: 199-483
Cow position: chr16:46500835-46501125 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 35

Conread position: 201-495
Cow position: chr16:10568290-10568572 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 200
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 88, 28

Conread position: 203-465
Cow position: chr16:3088563-3088301 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 175
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 36, 14

Conread position: 203-465
Cow position: chr16:54324698-54324432 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 14

Conread position: 203-477
Cow position: chr16:19779010-19778736 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr16:27594145-27594423 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 192
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 36, 14

Conread position: 204-483
Cow position: chr16:37480217-37479934 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 189
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 13

Conread position: 206-480
Cow position: chr16:43896622-43896343 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 192
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 120

Conread position: 206-482
Cow position: chr16:36087774-36087500 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 183
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 36, 63

Conread position: 208-475
Cow position: chr16:19664129-19663859 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 52, 114

Conread position: 217-470
Cow position: chr16:5662489-5662746 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 255

Conread position: 217-477
Cow position: chr16:2726562-2726299 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 13, 189

Conread position: 217-477
Cow position: chr16:28196591-28196325 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 177
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 217-483
Cow position: chr16:2238114-2237847 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 154

Conread position: 217-483
Cow position: chr16:5527735-5527463 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 22, 0

Conread position: 217-483
Cow position: chr16:27732732-27732460 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 187
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 133

Conread position: 217-483
Cow position: chr16:32937172-32937442 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 179
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 12, 224

Conread position: 217-483
Cow position: chr16:40295510-40295241 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 92

Conread position: 218-474
Cow position: chr16:41762476-41762736 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 108

Conread position: 219-477
Cow position: chr16:28470413-28470154 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 78, 18

Conread position: 219-480
Cow position: chr16:23983957-23984219 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 79, 18

Conread position: 220-483
Cow position: chr16:1959962-1959700 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 157

Conread position: 225-453
Cow position: chr16:1566795-1566563 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 5, 100

Conread position: 225-477
Cow position: chr16:23671367-23671615 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 169
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 75, 99

Conread position: 225-483
Cow position: chr16:23535231-23534979 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 58

Conread position: 225-501
Cow position: chr16:12537288-12537004 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 22, 49

Conread position: 237-483
Cow position: chr16:49255556-49255311 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 46

Conread position: 321-465
Cow position: chr16:36789781-36789927 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 107
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 12, 0

Conread position: 321-477
Cow position: chr16:5119261-5119103 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 56, 0

Conread position: 322-482
Cow position: chr16:4367845-4368005 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 78

Conread position: 324-504
Cow position: chr16:32779187-32778999 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 62, 113

Show alignments to all cow chromosomes.