Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 116-465 |
| Cow position: | chr17:2263266-2263616 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 102 |
| Conread position: | 121-482 |
| Cow position: | chr17:39453223-39453588 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 123-464 |
| Cow position: | chr17:4675225-4675579 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 212 |
| Conread position: | 124-506 |
| Cow position: | chr17:6077302-6077694 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 244 |
| Conread position: | 147-460 |
| Cow position: | chr17:16121433-16121117 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 165-480 |
| Cow position: | chr17:15372408-15372705 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 302, 9 |
| Conread position: | 191-460 |
| Cow position: | chr17:20080680-20080408 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 191-480 |
| Cow position: | chr17:1786764-1786473 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 124 |
| Conread position: | 191-483 |
| Cow position: | chr17:6261058-6261355 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 27, 191 |
| Conread position: | 191-503 |
| Cow position: | chr17:3640707-3640388 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 147 |
| Conread position: | 201-470 |
| Cow position: | chr17:10841957-10842238 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 46, 206 |
| Conread position: | 201-477 |
| Cow position: | chr17:11784065-11784357 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 201-477 |
| Cow position: | chr17:34157332-34157612 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 203-477 |
| Cow position: | chr17:182788-183063 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr17:3655080-3654799 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr17:39049427-39049705 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr17:9080208-9079924 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr17:15436996-15437280 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr17:24783374-24783658 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 203-504 |
| Cow position: | chr17:15142142-15141832 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 203-504 |
| Cow position: | chr17:23323239-23322923 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 204-483 |
| Cow position: | chr17:2246868-2246590 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 208-504 |
| Cow position: | chr17:4605082-4605384 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 217-465 |
| Cow position: | chr17:2580850-2581099 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 217-473 |
| Cow position: | chr17:733120-732856 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 217-477 |
| Cow position: | chr17:14936746-14936481 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 120 |
| Conread position: | 217-477 |
| Cow position: | chr17:15851917-15852183 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 217-483 |
| Cow position: | chr17:4061329-4061600 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 13, 70 |
| Conread position: | 217-483 |
| Cow position: | chr17:5227847-5228118 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 153 |
| Conread position: | 217-483 |
| Cow position: | chr17:6069774-6070039 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 217-483 |
| Cow position: | chr17:11086499-11086231 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 217-483 |
| Cow position: | chr17:40806033-40806303 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 17, 108 |
| Conread position: | 217-508 |
| Cow position: | chr17:1704094-1704392 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 219-477 |
| Cow position: | chr17:28027271-28027014 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 107, 18 |
| Conread position: | 219-480 |
| Cow position: | chr17:24028768-24028510 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 220-483 |
| Cow position: | chr17:23038799-23039059 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 224-465 |
| Cow position: | chr17:4083249-4083496 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 225-480 |
| Cow position: | chr17:14240736-14240998 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 225-501 |
| Cow position: | chr17:15326512-15326791 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 225-504 |
| Cow position: | chr17:38946596-38946877 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 75, 160 |
| Conread position: | 240-481 |
| Cow position: | chr17:19899275-19899518 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 156 |
| Conread position: | 240-481 |
| Cow position: | chr17:36001801-36001557 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 8, 201 |
| Conread position: | 242-477 |
| Cow position: | chr17:13967179-13967416 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 57, 227 |
| Conread position: | 242-483 |
| Cow position: | chr17:27793525-27793287 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 252-503 |
| Cow position: | chr17:3945074-3944817 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 263-483 |
| Cow position: | chr17:31094509-31094297 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 64, 100 |
Show alignments to all cow chromosomes.