Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 120-339 |
| Cow position: | chr18:43621955-43622175 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 120 |
| Conread position: | 120-503 |
| Cow position: | chr18:33270253-33270627 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 206 |
| Conread position: | 120-503 |
| Cow position: | chr18:34043939-34044318 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 121-477 |
| Cow position: | chr18:33142564-33142935 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 35, 197 |
| Conread position: | 123-481 |
| Cow position: | chr18:13357495-13357856 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 190 |
| Conread position: | 191-453 |
| Cow position: | chr18:23799055-23799322 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 179 |
| Conread position: | 191-468 |
| Cow position: | chr18:37507367-37507650 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 210 |
| Conread position: | 191-483 |
| Cow position: | chr18:25352669-25352964 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-483 |
| Cow position: | chr18:29865202-29864906 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 191-501 |
| Cow position: | chr18:16089525-16089840 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 27, 298 |
| Conread position: | 200-465 |
| Cow position: | chr18:36510035-36510302 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 203-465 |
| Cow position: | chr18:51343109-51343368 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 203-477 |
| Cow position: | chr18:26245202-26244924 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr18:19353787-19354071 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 204-483 |
| Cow position: | chr18:16175197-16174916 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 204-483 |
| Cow position: | chr18:51482280-51482558 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 208-483 |
| Cow position: | chr18:45184713-45184983 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 217-458 |
| Cow position: | chr18:6061377-6061138 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 110 |
| Conread position: | 217-501 |
| Cow position: | chr18:33752138-33752421 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 217-501 |
| Cow position: | chr18:46884216-46883945 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 12, 59 |
| Conread position: | 219-483 |
| Cow position: | chr18:41839365-41839112 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 158, 18 |
| Conread position: | 219-503 |
| Cow position: | chr18:40315991-40315718 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 220-465 |
| Cow position: | chr18:27988628-27988871 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 37 |
| Conread position: | 220-480 |
| Cow position: | chr18:18000008-17999754 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 157, 9 |
| Conread position: | 224-481 |
| Cow position: | chr18:35313808-35314065 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 224-515 |
| Cow position: | chr18:48809580-48809869 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 228-477 |
| Cow position: | chr18:19485587-19485841 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 237-481 |
| Cow position: | chr18:42062806-42063051 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 239-588 |
| Cow position: | chr18:37157770-37157405 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 8, 301 |
| Conread position: | 240-477 |
| Cow position: | chr18:17962285-17962051 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 240-478 |
| Cow position: | chr18:159771-159541 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 8, 93 |
| Conread position: | 240-480 |
| Cow position: | chr18:14421741-14421977 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 243-480 |
| Cow position: | chr18:51274616-51274380 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 139, 13 |
| Conread position: | 251-477 |
| Cow position: | chr18:5534480-5534707 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 252-501 |
| Cow position: | chr18:2646051-2645807 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 256-483 |
| Cow position: | chr18:12992572-12992794 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 119, 49 |
| Conread position: | 267-504 |
| Cow position: | chr18:33265842-33266088 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 273-480 |
| Cow position: | chr18:24617629-24617833 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 290-483 |
| Cow position: | chr18:25921905-25922095 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 48 |
Show alignments to all cow chromosomes.