Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 113-483 |
| Cow position: | chr2:44650023-44650399 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 116-461 |
| Cow position: | chr2:38013761-38014121 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 193 |
| Conread position: | 116-483 |
| Cow position: | chr2:36975856-36976236 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 40, 254 |
| Conread position: | 120-477 |
| Cow position: | chr2:14210042-14209677 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 120-482 |
| Cow position: | chr2:31899349-31898959 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 294 |
| Conread position: | 120-483 |
| Cow position: | chr2:34473825-34473444 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 271 |
| Conread position: | 120-504 |
| Cow position: | chr2:35356772-35357175 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 35, 220 |
| Conread position: | 122-503 |
| Cow position: | chr2:49625148-49624757 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 90, 45 |
| Conread position: | 134-470 |
| Cow position: | chr2:3832429-3832092 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 131 |
| Conread position: | 164-482 |
| Cow position: | chr2:8735184-8735505 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 47, 87 |
| Conread position: | 169-465 |
| Cow position: | chr2:24926251-24926548 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 169-482 |
| Cow position: | chr2:10681312-10681629 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 191-465 |
| Cow position: | chr2:8119398-8119675 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 27, 218 |
| Conread position: | 191-479 |
| Cow position: | chr2:10264553-10264263 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-483 |
| Cow position: | chr2:281830-281535 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 41, 218 |
| Conread position: | 191-483 |
| Cow position: | chr2:25887696-25887397 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-503 |
| Cow position: | chr2:54693802-54694117 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 177 |
| Conread position: | 192-483 |
| Cow position: | chr2:53330653-53330946 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 81, 27 |
| Conread position: | 192-504 |
| Cow position: | chr2:288927-288606 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 195-477 |
| Cow position: | chr2:72688466-72688753 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 196-501 |
| Cow position: | chr2:50078426-50078740 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 212 |
| Conread position: | 201-483 |
| Cow position: | chr2:47037567-47037281 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 203-444 |
| Cow position: | chr2:17424727-17424971 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-463 |
| Cow position: | chr2:26904888-26904624 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-465 |
| Cow position: | chr2:53540807-53541068 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr2:364199-363922 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr2:9908782-9909060 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr2:12696598-12696323 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 203-477 |
| Cow position: | chr2:26922295-26922573 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr2:51988918-51988642 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 203-477 |
| Cow position: | chr2:52617344-52617622 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 203-501 |
| Cow position: | chr2:39422493-39422793 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-504 |
| Cow position: | chr2:10610777-10610464 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 204-465 |
| Cow position: | chr2:174697-174434 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 121 |
| Conread position: | 204-483 |
| Cow position: | chr2:10185357-10185076 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 204-483 |
| Cow position: | chr2:13044843-13044556 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 204-483 |
| Cow position: | chr2:16901126-16901407 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 205-481 |
| Cow position: | chr2:25766879-25767149 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 5, 25 |
| Conread position: | 205-484 |
| Cow position: | chr2:41687638-41687921 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 206-481 |
| Cow position: | chr2:2394624-2394908 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 208-483 |
| Cow position: | chr2:56888613-56888889 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 210-480 |
| Cow position: | chr2:14823924-14824190 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 217-462 |
| Cow position: | chr2:28794122-28794368 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 90 |
| Conread position: | 217-465 |
| Cow position: | chr2:24925449-24925699 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 217-465 |
| Cow position: | chr2:44990425-44990168 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 217-474 |
| Cow position: | chr2:24471751-24471484 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 217-483 |
| Cow position: | chr2:6005964-6005695 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 22, 191 |
| Conread position: | 217-483 |
| Cow position: | chr2:32065157-32064887 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 219-462 |
| Cow position: | chr2:42669819-42669579 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 219-465 |
| Cow position: | chr2:25743430-25743671 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 219-483 |
| Cow position: | chr2:65937346-65937076 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 79, 23 |
| Conread position: | 220-480 |
| Cow position: | chr2:81258063-81258326 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 27, 43 |
| Conread position: | 220-483 |
| Cow position: | chr2:574474-574742 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 104 |
| Conread position: | 220-483 |
| Cow position: | chr2:20872602-20872339 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 220-483 |
| Cow position: | chr2:64768309-64768039 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 220-503 |
| Cow position: | chr2:80291875-80291590 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 224-477 |
| Cow position: | chr2:9958186-9957927 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 224-483 |
| Cow position: | chr2:36981277-36981541 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 225-483 |
| Cow position: | chr2:36029499-36029245 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 88 |
| Conread position: | 225-483 |
| Cow position: | chr2:52063653-52063911 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 225-490 |
| Cow position: | chr2:34052046-34052320 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 13, 268 |
| Conread position: | 225-504 |
| Cow position: | chr2:3323675-3323384 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 228-473 |
| Cow position: | chr2:36082693-36082943 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 72, 51 |
| Conread position: | 229-504 |
| Cow position: | chr2:15446256-15445991 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 237-477 |
| Cow position: | chr2:44934085-44933843 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 146 |
| Conread position: | 237-483 |
| Cow position: | chr2:905171-905411 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 242-477 |
| Cow position: | chr2:2411874-2411641 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 242-477 |
| Cow position: | chr2:4402243-4402004 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 242-483 |
| Cow position: | chr2:2087257-2087017 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 46 |
| Conread position: | 242-483 |
| Cow position: | chr2:57336454-57336698 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 263-481 |
| Cow position: | chr2:39690837-39691053 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 35, 141 |
| Conread position: | 264-476 |
| Cow position: | chr2:16074605-16074395 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 58 |
| Conread position: | 264-504 |
| Cow position: | chr2:63518904-63519151 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 35, 42 |
Show alignments to all cow chromosomes.