Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 116-476 |
| Cow position: | chr21:38023523-38023901 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 119-483 |
| Cow position: | chr21:1286816-1286433 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 120-502 |
| Cow position: | chr21:35774328-35774730 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 35, 168 |
| Conread position: | 123-480 |
| Cow position: | chr21:30462-30818 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 127-435 |
| Cow position: | chr21:15941089-15941405 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 185 |
| Conread position: | 157-451 |
| Cow position: | chr21:39480174-39479883 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 109 |
| Conread position: | 167-477 |
| Cow position: | chr21:25125076-25125382 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 167-483 |
| Cow position: | chr21:27069496-27069182 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 172-480 |
| Cow position: | chr21:34655309-34655607 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 174-472 |
| Cow position: | chr21:5839715-5839418 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 188-489 |
| Cow position: | chr21:997353-997059 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 191-477 |
| Cow position: | chr21:26836667-26836966 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 102 |
| Conread position: | 191-477 |
| Cow position: | chr21:30563157-30563446 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-480 |
| Cow position: | chr21:2512332-2512627 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 221 |
| Conread position: | 191-480 |
| Cow position: | chr21:2539602-2539299 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr21:147411-147703 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 191-483 |
| Cow position: | chr21:10851560-10851859 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 24, 130 |
| Conread position: | 191-483 |
| Cow position: | chr21:47646817-47647113 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 27, 136 |
| Conread position: | 191-503 |
| Cow position: | chr21:2712404-2712711 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 196-483 |
| Cow position: | chr21:9893461-9893751 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 203-453 |
| Cow position: | chr21:12054519-12054266 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr21:34822712-34822434 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr21:38801934-38802213 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 203-504 |
| Cow position: | chr21:39426569-39426875 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 208-483 |
| Cow position: | chr21:29004028-29003746 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 101, 7 |
| Conread position: | 217-441 |
| Cow position: | chr21:35145263-35145483 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 217-465 |
| Cow position: | chr21:47942459-47942712 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 217-477 |
| Cow position: | chr21:6414514-6414248 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-483 |
| Cow position: | chr21:5018650-5018922 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 217-483 |
| Cow position: | chr21:13298109-13298375 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 71 |
| Conread position: | 217-483 |
| Cow position: | chr21:33253693-33253963 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 13, 192 |
| Conread position: | 218-453 |
| Cow position: | chr21:45838670-45838448 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 17 |
| Conread position: | 219-480 |
| Cow position: | chr21:2880304-2880046 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 219-483 |
| Cow position: | chr21:3780291-3780555 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 219-483 |
| Cow position: | chr21:40270154-40269890 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 220-482 |
| Cow position: | chr21:4564980-4565241 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 122 |
| Conread position: | 220-483 |
| Cow position: | chr21:31514795-31514534 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 225-502 |
| Cow position: | chr21:4779725-4780000 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 15 |
| Conread position: | 226-482 |
| Cow position: | chr21:24085283-24085021 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 27, 176 |
| Conread position: | 226-483 |
| Cow position: | chr21:28613848-28614110 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 134 |
| Conread position: | 227-446 |
| Cow position: | chr21:25395718-25395501 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 237-504 |
| Cow position: | chr21:21943049-21942777 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 21, 186 |
| Conread position: | 240-476 |
| Cow position: | chr21:41404851-41405091 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 110 |
| Conread position: | 240-505 |
| Cow position: | chr21:45491580-45491854 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 242-504 |
| Cow position: | chr21:37372773-37373037 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 243-477 |
| Cow position: | chr21:26635618-26635381 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 262-504 |
| Cow position: | chr21:11507172-11507425 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 264-480 |
| Cow position: | chr21:30597908-30597691 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 267-482 |
| Cow position: | chr21:4784620-4784407 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 93 |
| Conread position: | 267-483 |
| Cow position: | chr21:19612323-19612541 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 32, 212 |
| Conread position: | 268-504 |
| Cow position: | chr21:33710713-33710960 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 269-480 |
| Cow position: | chr21:21520179-21520382 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 313-500 |
| Cow position: | chr21:5599066-5598876 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 321-504 |
| Cow position: | chr21:14645391-14645201 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 54, 125 |
Show alignments to all cow chromosomes.