Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 120-481 |
| Cow position: | chr24:5942993-5943369 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 42, 213 |
| Conread position: | 120-483 |
| Cow position: | chr24:22972393-22972761 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 120-501 |
| Cow position: | chr24:4414233-4413833 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 176 |
| Conread position: | 122-483 |
| Cow position: | chr24:36480654-36480262 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 127-481 |
| Cow position: | chr24:25467323-25466951 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 201 |
| Conread position: | 129-481 |
| Cow position: | chr24:39492324-39491937 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 220 |
| Conread position: | 130-483 |
| Cow position: | chr24:6675915-6676282 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 189 |
| Conread position: | 167-483 |
| Cow position: | chr24:19834777-19835103 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 175-480 |
| Cow position: | chr24:14755379-14755692 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 177-477 |
| Cow position: | chr24:13179634-13179331 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 98 |
| Conread position: | 179-448 |
| Cow position: | chr24:12334343-12334070 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 191-483 |
| Cow position: | chr24:147214-146915 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr24:12238685-12238981 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 196-511 |
| Cow position: | chr24:29352443-29352125 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 27, 166 |
| Conread position: | 203-477 |
| Cow position: | chr24:310280-310558 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr24:5991812-5991535 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 203-477 |
| Cow position: | chr24:6435896-6436174 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr24:7062955-7063231 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr24:23504447-23504169 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr24:44018921-44019199 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-514 |
| Cow position: | chr24:12699411-12699097 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 204-483 |
| Cow position: | chr24:29188708-29188983 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 208-482 |
| Cow position: | chr24:38474740-38475007 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 208-483 |
| Cow position: | chr24:12149879-12149598 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 217-483 |
| Cow position: | chr24:13044203-13043931 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-484 |
| Cow position: | chr24:17278960-17278692 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 10, 109 |
| Conread position: | 220-465 |
| Cow position: | chr24:12087631-12087877 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 73, 42 |
| Conread position: | 222-477 |
| Cow position: | chr24:5887823-5887563 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 224-465 |
| Cow position: | chr24:8606248-8606498 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 229-480 |
| Cow position: | chr24:38638964-38639212 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 237-503 |
| Cow position: | chr24:5776951-5776681 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 77 |
| Conread position: | 242-487 |
| Cow position: | chr24:11151784-11151534 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 256-483 |
| Cow position: | chr24:41003954-41004183 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 8 |
| Conread position: | 267-476 |
| Cow position: | chr24:6963273-6963061 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 267-484 |
| Cow position: | chr24:6036467-6036685 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 55 |
| Conread position: | 267-503 |
| Cow position: | chr24:36558073-36557846 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 106 |
Show alignments to all cow chromosomes.