Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 118-483 |
| Cow position: | chr29:14097991-14098365 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 37, 152 |
| Conread position: | 120-470 |
| Cow position: | chr29:19654855-19655226 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 225 |
| Conread position: | 120-477 |
| Cow position: | chr29:32892018-32892389 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 179 |
| Conread position: | 120-480 |
| Cow position: | chr29:47210-46844 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 164 |
| Conread position: | 120-483 |
| Cow position: | chr29:23977352-23977743 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 121-442 |
| Cow position: | chr29:18397444-18397785 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 219 |
| Conread position: | 123-480 |
| Cow position: | chr29:42102731-42103096 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 213 |
| Conread position: | 164-465 |
| Cow position: | chr29:5958879-5959176 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 6, 63 |
| Conread position: | 164-483 |
| Cow position: | chr29:20252453-20252785 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 125 |
| Conread position: | 164-483 |
| Cow position: | chr29:34798518-34798191 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 165-477 |
| Cow position: | chr29:2747165-2746848 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 168-466 |
| Cow position: | chr29:36320717-36321010 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 34, 81 |
| Conread position: | 176-503 |
| Cow position: | chr29:647128-647454 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 123, 39 |
| Conread position: | 182-478 |
| Cow position: | chr29:16345526-16345827 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 190-502 |
| Cow position: | chr29:36596748-36596437 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 191-477 |
| Cow position: | chr29:27262393-27262098 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 93 |
| Conread position: | 191-483 |
| Cow position: | chr29:5236342-5236641 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr29:15997329-15997032 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 180 |
| Conread position: | 191-483 |
| Cow position: | chr29:16023885-16024183 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 124 |
| Conread position: | 191-483 |
| Cow position: | chr29:19621956-19621652 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-483 |
| Cow position: | chr29:25931205-25930901 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 191-483 |
| Cow position: | chr29:26163513-26163213 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 203-444 |
| Cow position: | chr29:18855609-18855365 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-476 |
| Cow position: | chr29:13851537-13851258 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 203-477 |
| Cow position: | chr29:7845728-7846004 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr29:10022996-10022718 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr29:13622522-13622244 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 203-477 |
| Cow position: | chr29:21431515-21431238 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr29:29502923-29502645 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr29:32558415-32558137 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr29:38207327-38207050 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 217-477 |
| Cow position: | chr29:27180405-27180139 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-480 |
| Cow position: | chr29:14210200-14209935 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 217-480 |
| Cow position: | chr29:38228326-38228595 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 133 |
| Conread position: | 217-483 |
| Cow position: | chr29:2691511-2691782 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 13, 139 |
| Conread position: | 217-483 |
| Cow position: | chr29:14587267-14587539 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 217-483 |
| Cow position: | chr29:24335652-24335384 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 217-483 |
| Cow position: | chr29:38619529-38619261 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 12, 109 |
| Conread position: | 217-483 |
| Cow position: | chr29:40501650-40501387 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 217-483 |
| Cow position: | chr29:43324871-43325136 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 219-480 |
| Cow position: | chr29:6264645-6264383 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 220-470 |
| Cow position: | chr29:7429771-7429515 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 220-483 |
| Cow position: | chr29:4633272-4633013 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 88 |
| Conread position: | 220-483 |
| Cow position: | chr29:45461103-45461366 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 224-477 |
| Cow position: | chr29:609289-609034 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 224-477 |
| Cow position: | chr29:35298268-35298524 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 225-465 |
| Cow position: | chr29:2101195-2101440 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 226-504 |
| Cow position: | chr29:19526928-19526637 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 227-453 |
| Cow position: | chr29:6568716-6568494 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 228-461 |
| Cow position: | chr29:4516926-4517158 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 146 |
| Conread position: | 240-481 |
| Cow position: | chr29:38713044-38713283 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 53, 165 |
| Conread position: | 240-508 |
| Cow position: | chr29:37165466-37165736 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 242-477 |
| Cow position: | chr29:31182784-31183016 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 57, 119 |
| Conread position: | 267-476 |
| Cow position: | chr29:6408722-6408511 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 267-482 |
| Cow position: | chr29:34585681-34585902 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 267-503 |
| Cow position: | chr29:31547274-31547038 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 38 |
Show alignments to all cow chromosomes.