Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 116-483 |
| Cow position: | chr3:2854306-2853911 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 119-473 |
| Cow position: | chr3:24354326-24354669 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 28, 61 |
| Conread position: | 120-421 |
| Cow position: | chr3:10240802-10241126 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 120-477 |
| Cow position: | chr3:65208338-65208715 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 120-483 |
| Cow position: | chr3:3840370-3839981 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 120-483 |
| Cow position: | chr3:19755793-19755427 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 35, 190 |
| Conread position: | 121-363 |
| Cow position: | chr3:57979474-57979223 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 137-484 |
| Cow position: | chr3:16899020-16898668 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 62 |
| Conread position: | 164-477 |
| Cow position: | chr3:30315761-30316076 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 164-483 |
| Cow position: | chr3:23289125-23288799 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 293 |
| Conread position: | 167-422 |
| Cow position: | chr3:38867535-38867791 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 169-483 |
| Cow position: | chr3:34029704-34029385 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 172-483 |
| Cow position: | chr3:40338925-40338612 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 179-483 |
| Cow position: | chr3:18812723-18813034 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 191-480 |
| Cow position: | chr3:42448353-42448648 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 191-483 |
| Cow position: | chr3:5884772-5885064 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 30, 73 |
| Conread position: | 191-483 |
| Cow position: | chr3:40824629-40824927 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 272 |
| Conread position: | 191-483 |
| Cow position: | chr3:49136328-49136030 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 174 |
| Conread position: | 191-483 |
| Cow position: | chr3:53516841-53517145 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 191-483 |
| Cow position: | chr3:57483487-57483190 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 6, 147 |
| Conread position: | 191-483 |
| Cow position: | chr3:66621438-66621732 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 196-480 |
| Cow position: | chr3:56100439-56100157 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 125 |
| Conread position: | 196-482 |
| Cow position: | chr3:7313226-7312939 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 197-477 |
| Cow position: | chr3:18860662-18860947 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 197-504 |
| Cow position: | chr3:45033985-45034304 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 201-477 |
| Cow position: | chr3:19799922-19799649 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 203-461 |
| Cow position: | chr3:48843506-48843769 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 169 |
| Conread position: | 203-465 |
| Cow position: | chr3:20382280-20382553 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-465 |
| Cow position: | chr3:47080158-47079893 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr3:1742583-1742861 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr3:4287341-4287616 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 203-477 |
| Cow position: | chr3:29575872-29575594 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr3:30330868-30330591 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr3:41209350-41209072 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr3:19879896-19880180 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr3:32621789-32621505 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 203-483 |
| Cow position: | chr3:44925314-44925598 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 203-483 |
| Cow position: | chr3:74058778-74059062 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-504 |
| Cow position: | chr3:29330038-29329725 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 204-453 |
| Cow position: | chr3:72631319-72631567 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 204-479 |
| Cow position: | chr3:64016113-64015836 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 204-483 |
| Cow position: | chr3:5952928-5952651 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 217-465 |
| Cow position: | chr3:2870052-2870305 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-476 |
| Cow position: | chr3:31416284-31416543 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 217-477 |
| Cow position: | chr3:36863194-36862928 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-477 |
| Cow position: | chr3:37970310-37970576 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 160 |
| Conread position: | 217-477 |
| Cow position: | chr3:51364522-51364259 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 217-480 |
| Cow position: | chr3:43481060-43481328 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 217-483 |
| Cow position: | chr3:6783631-6783904 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 217-483 |
| Cow position: | chr3:23206607-23206338 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 217-483 |
| Cow position: | chr3:36877388-36877125 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 160 |
| Conread position: | 217-483 |
| Cow position: | chr3:63240979-63240708 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 219-470 |
| Cow position: | chr3:21181422-21181175 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 219-477 |
| Cow position: | chr3:56327375-56327637 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 220-483 |
| Cow position: | chr3:65207955-65207687 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 7, 214 |
| Conread position: | 224-477 |
| Cow position: | chr3:27919698-27919957 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 224-483 |
| Cow position: | chr3:5993809-5993552 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 101 |
| Conread position: | 224-483 |
| Cow position: | chr3:30617649-30617388 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 227 |
| Conread position: | 225-470 |
| Cow position: | chr3:46503825-46504071 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 225-471 |
| Cow position: | chr3:29338631-29338381 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 225-477 |
| Cow position: | chr3:7247806-7248064 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 225-477 |
| Cow position: | chr3:34506074-34505823 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 225-503 |
| Cow position: | chr3:50916616-50916901 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 227-483 |
| Cow position: | chr3:83274769-83275023 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 228-463 |
| Cow position: | chr3:16224164-16224399 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 228-503 |
| Cow position: | chr3:33843541-33843277 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 229-471 |
| Cow position: | chr3:8239976-8240215 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 146, 11 |
| Conread position: | 229-483 |
| Cow position: | chr3:27864455-27864710 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 8 |
| Conread position: | 240-476 |
| Cow position: | chr3:19832628-19832385 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 251-480 |
| Cow position: | chr3:48058060-48057828 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 251-483 |
| Cow position: | chr3:12566125-12565888 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 20, 16 |
| Conread position: | 252-483 |
| Cow position: | chr3:62503427-62503662 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 269-483 |
| Cow position: | chr3:69932507-69932298 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 273-483 |
| Cow position: | chr3:76380738-76380530 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 41 |
Show alignments to all cow chromosomes.