Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 120-465 |
| Cow position: | chr4:13494278-13494652 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 120-483 |
| Cow position: | chr4:44726535-44726917 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 181 |
| Conread position: | 120-491 |
| Cow position: | chr4:30472180-30472556 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 37, 70 |
| Conread position: | 164-483 |
| Cow position: | chr4:67717312-67717637 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 237 |
| Conread position: | 165-481 |
| Cow position: | chr4:45407988-45408305 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 167-476 |
| Cow position: | chr4:34221771-34222072 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 167-483 |
| Cow position: | chr4:12588348-12588667 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 167-503 |
| Cow position: | chr4:47462842-47463179 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 172-483 |
| Cow position: | chr4:1952536-1952228 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 174-477 |
| Cow position: | chr4:604654-604963 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 178-504 |
| Cow position: | chr4:16060308-16060646 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 190-477 |
| Cow position: | chr4:41955802-41956096 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 191-465 |
| Cow position: | chr4:57985032-57985312 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-477 |
| Cow position: | chr4:20236356-20236065 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 191-483 |
| Cow position: | chr4:356948-357244 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 27, 137 |
| Conread position: | 191-483 |
| Cow position: | chr4:25598445-25598146 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr4:33494595-33494894 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr4:43882150-43882444 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 152 |
| Conread position: | 191-483 |
| Cow position: | chr4:67682237-67682536 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-504 |
| Cow position: | chr4:41959940-41960267 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 199-483 |
| Cow position: | chr4:54152549-54152276 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 201-483 |
| Cow position: | chr4:9847155-9846868 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 203-463 |
| Cow position: | chr4:65665339-65665076 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-465 |
| Cow position: | chr4:6567439-6567699 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr4:9355437-9355712 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr4:14386876-14387154 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr4:18337909-18338187 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 203-480 |
| Cow position: | chr4:4417116-4417388 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 203-483 |
| Cow position: | chr4:27334986-27335277 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-484 |
| Cow position: | chr4:5443771-5443486 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 278 |
| Conread position: | 203-489 |
| Cow position: | chr4:45106521-45106809 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-504 |
| Cow position: | chr4:17092807-17092495 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 204-465 |
| Cow position: | chr4:6865446-6865188 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 204-480 |
| Cow position: | chr4:1049201-1048927 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 78 |
| Conread position: | 208-462 |
| Cow position: | chr4:19718639-19718385 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 35, 58 |
| Conread position: | 217-477 |
| Cow position: | chr4:17502264-17501998 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-483 |
| Cow position: | chr4:46574150-46574417 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 220-477 |
| Cow position: | chr4:44644680-44644421 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 220-483 |
| Cow position: | chr4:12240149-12239885 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 220-483 |
| Cow position: | chr4:14199240-14199508 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 220-483 |
| Cow position: | chr4:16639681-16639949 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 220-483 |
| Cow position: | chr4:43672580-43672840 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 220-503 |
| Cow position: | chr4:34178162-34177887 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 23 |
| Conread position: | 224-483 |
| Cow position: | chr4:14755592-14755332 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 224-483 |
| Cow position: | chr4:43318561-43318297 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 8, 114 |
| Conread position: | 224-484 |
| Cow position: | chr4:952028-952276 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 22 |
| Conread position: | 225-481 |
| Cow position: | chr4:52963053-52962809 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 74, 38 |
| Conread position: | 225-483 |
| Cow position: | chr4:17924886-17924622 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 227-452 |
| Cow position: | chr4:39932027-39932252 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 229-483 |
| Cow position: | chr4:3356853-3356594 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 240-401 |
| Cow position: | chr4:52268685-52268525 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 135, 124 |
| Conread position: | 242-477 |
| Cow position: | chr4:18423421-18423188 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 57, 138 |
| Conread position: | 242-477 |
| Cow position: | chr4:32213264-32213505 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 267-502 |
| Cow position: | chr4:41978275-41978039 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 218 |
| Conread position: | 316-483 |
| Cow position: | chr4:65041460-65041293 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 89 |
Show alignments to all cow chromosomes.