Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 80-483 |
| Cow position: | chr5:25636848-25637266 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 120-465 |
| Cow position: | chr5:76197849-76197490 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 120-475 |
| Cow position: | chr5:18664829-18665200 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 37, 234 |
| Conread position: | 120-483 |
| Cow position: | chr5:34287180-34286791 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 36, 46 |
| Conread position: | 120-483 |
| Cow position: | chr5:55834732-55834369 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 39, 67 |
| Conread position: | 121-369 |
| Cow position: | chr5:29670200-29670454 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 204 |
| Conread position: | 121-483 |
| Cow position: | chr5:53945888-53946270 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 14, 222 |
| Conread position: | 124-483 |
| Cow position: | chr5:37654975-37655342 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 238 |
| Conread position: | 160-477 |
| Cow position: | chr5:54620146-54620479 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 165 |
| Conread position: | 164-483 |
| Cow position: | chr5:59283437-59283758 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 172-477 |
| Cow position: | chr5:46808442-46808739 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 24 |
| Conread position: | 191-477 |
| Cow position: | chr5:64780872-64780578 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-480 |
| Cow position: | chr5:34190059-34190356 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 27, 145 |
| Conread position: | 191-480 |
| Cow position: | chr5:46737446-46737155 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-483 |
| Cow position: | chr5:2915590-2915876 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 191-483 |
| Cow position: | chr5:6153756-6153456 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr5:18560263-18559963 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-483 |
| Cow position: | chr5:52434883-52435177 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 191-483 |
| Cow position: | chr5:57481397-57481097 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-484 |
| Cow position: | chr5:45701457-45701752 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 24, 123 |
| Conread position: | 191-500 |
| Cow position: | chr5:40923503-40923200 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-503 |
| Cow position: | chr5:41960600-41960287 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 196-483 |
| Cow position: | chr5:49519706-49519990 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 201-465 |
| Cow position: | chr5:987912-987645 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 203-465 |
| Cow position: | chr5:4757025-4756760 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-465 |
| Cow position: | chr5:46777552-46777816 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 203-477 |
| Cow position: | chr5:23959171-23958894 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr5:26078034-26077757 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr5:32773923-32774201 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr5:35301257-35301534 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 203-477 |
| Cow position: | chr5:59061796-59062072 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr5:10775105-10774821 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-504 |
| Cow position: | chr5:4018040-4017743 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 204-434 |
| Cow position: | chr5:46646114-46646344 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 205-483 |
| Cow position: | chr5:10920000-10920280 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 217-434 |
| Cow position: | chr5:54791462-54791241 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 217-477 |
| Cow position: | chr5:10813580-10813314 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-483 |
| Cow position: | chr5:3502938-3502665 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 217-483 |
| Cow position: | chr5:4070391-4070658 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 97 |
| Conread position: | 217-484 |
| Cow position: | chr5:69622758-69623033 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 176 |
| Conread position: | 217-501 |
| Cow position: | chr5:55629164-55629451 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 219-483 |
| Cow position: | chr5:37733526-37733791 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 219-483 |
| Cow position: | chr5:48807555-48807291 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 220-477 |
| Cow position: | chr5:7275014-7275270 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 224-483 |
| Cow position: | chr5:31707740-31708005 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 225-477 |
| Cow position: | chr5:307237-306978 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 218 |
| Conread position: | 229-476 |
| Cow position: | chr5:50947817-50948068 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 237-480 |
| Cow position: | chr5:63076738-63076492 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 238-480 |
| Cow position: | chr5:27197802-27198048 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 242-483 |
| Cow position: | chr5:27908073-27907829 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 251-477 |
| Cow position: | chr5:2459190-2459418 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 252-503 |
| Cow position: | chr5:23686691-23686446 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 262-477 |
| Cow position: | chr5:41376636-41376418 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 262-477 |
| Cow position: | chr5:58197234-58197452 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 264-477 |
| Cow position: | chr5:4684584-4684369 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 149 |
| Conread position: | 267-453 |
| Cow position: | chr5:23236139-23236326 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 289-504 |
| Cow position: | chr5:1665180-1665402 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 79 |
| Conread position: | 297-477 |
| Cow position: | chr5:40131348-40131166 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 312-480 |
| Cow position: | chr5:31122317-31122148 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 72, 9 |
Show alignments to all cow chromosomes.