Cow genome map

Conread name: Ss1.1-Utr1-UTR010024A10.5

Conread position: 80-483
Cow position: chr5:25636848-25637266 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 276
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 19, 37

Conread position: 120-465
Cow position: chr5:76197849-76197490 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 232
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 120-475
Cow position: chr5:18664829-18665200 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 251
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 37, 234

Conread position: 120-483
Cow position: chr5:34287180-34286791 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 272
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 36, 46

Conread position: 120-483
Cow position: chr5:55834732-55834369 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 241
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 39, 67

Conread position: 121-369
Cow position: chr5:29670200-29670454 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 36, 204

Conread position: 121-483
Cow position: chr5:53945888-53946270 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 14, 222

Conread position: 124-483
Cow position: chr5:37654975-37655342 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 238
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 238

Conread position: 160-477
Cow position: chr5:54620146-54620479 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 226
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 17, 165

Conread position: 164-483
Cow position: chr5:59283437-59283758 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 27, 37

Conread position: 172-477
Cow position: chr5:46808442-46808739 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 206
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 81, 24

Conread position: 191-477
Cow position: chr5:64780872-64780578 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 27, 0

Conread position: 191-480
Cow position: chr5:34190059-34190356 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 194
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 145

Conread position: 191-480
Cow position: chr5:46737446-46737155 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 196
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 27, 135

Conread position: 191-483
Cow position: chr5:2915590-2915876 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 200
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 47

Conread position: 191-483
Cow position: chr5:6153756-6153456 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 27, 0

Conread position: 191-483
Cow position: chr5:18560263-18559963 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 135

Conread position: 191-483
Cow position: chr5:52434883-52435177 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 197
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 12, 92

Conread position: 191-483
Cow position: chr5:57481397-57481097 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 27, 0

Conread position: 191-484
Cow position: chr5:45701457-45701752 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 195
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 24, 123

Conread position: 191-500
Cow position: chr5:40923503-40923200 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 206
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 135

Conread position: 191-503
Cow position: chr5:41960600-41960287 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 206
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 27, 46

Conread position: 196-483
Cow position: chr5:49519706-49519990 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 22

Conread position: 201-465
Cow position: chr5:987912-987645 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 42, 22

Conread position: 203-465
Cow position: chr5:4757025-4756760 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 181
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 36, 14

Conread position: 203-465
Cow position: chr5:46777552-46777816 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 50, 14

Conread position: 203-477
Cow position: chr5:23959171-23958894 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr5:26078034-26077757 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr5:32773923-32774201 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 191
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr5:35301257-35301534 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 191
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 40, 14

Conread position: 203-477
Cow position: chr5:59061796-59062072 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 36, 14

Conread position: 203-483
Cow position: chr5:10775105-10774821 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 36, 14

Conread position: 203-504
Cow position: chr5:4018040-4017743 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 36, 14

Conread position: 204-434
Cow position: chr5:46646114-46646344 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 11

Conread position: 205-483
Cow position: chr5:10920000-10920280 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 25, 12

Conread position: 217-434
Cow position: chr5:54791462-54791241 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 150
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 217-477
Cow position: chr5:10813580-10813314 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 22, 0

Conread position: 217-483
Cow position: chr5:3502938-3502665 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 190
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 17, 0

Conread position: 217-483
Cow position: chr5:4070391-4070658 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 13, 97

Conread position: 217-484
Cow position: chr5:69622758-69623033 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 176

Conread position: 217-501
Cow position: chr5:55629164-55629451 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 13, 108

Conread position: 219-483
Cow position: chr5:37733526-37733791 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 88, 29

Conread position: 219-483
Cow position: chr5:48807555-48807291 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 78, 18

Conread position: 220-477
Cow position: chr5:7275014-7275270 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 27, 104

Conread position: 224-483
Cow position: chr5:31707740-31708005 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 225-477
Cow position: chr5:307237-306978 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 172
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 55, 218

Conread position: 229-476
Cow position: chr5:50947817-50948068 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 169
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 63, 13

Conread position: 237-480
Cow position: chr5:63076738-63076492 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 42

Conread position: 238-480
Cow position: chr5:27197802-27198048 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 10, 0

Conread position: 242-483
Cow position: chr5:27908073-27907829 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 58, 0

Conread position: 251-477
Cow position: chr5:2459190-2459418 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 252-503
Cow position: chr5:23686691-23686446 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 28

Conread position: 262-477
Cow position: chr5:41376636-41376418 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 37, 0

Conread position: 262-477
Cow position: chr5:58197234-58197452 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 264-477
Cow position: chr5:4684584-4684369 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 149

Conread position: 267-453
Cow position: chr5:23236139-23236326 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 32, 55

Conread position: 289-504
Cow position: chr5:1665180-1665402 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 72, 79

Conread position: 297-477
Cow position: chr5:40131348-40131166 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 312-480
Cow position: chr5:31122317-31122148 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 72, 9

Show alignments to all cow chromosomes.