Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 116-480 |
| Cow position: | chr6:68028113-68028501 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 123 |
| Conread position: | 120-483 |
| Cow position: | chr6:11723989-11723619 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 120-483 |
| Cow position: | chr6:13310171-13309799 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 120-483 |
| Cow position: | chr6:27528812-27528439 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 120-483 |
| Cow position: | chr6:67210920-67211279 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 36, 77 |
| Conread position: | 123-482 |
| Cow position: | chr6:50529667-50530031 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 123-483 |
| Cow position: | chr6:44262281-44261900 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 33, 263 |
| Conread position: | 153-504 |
| Cow position: | chr6:32416791-32417144 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 159-483 |
| Cow position: | chr6:7834730-7835070 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 167-477 |
| Cow position: | chr6:1535314-1535005 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 172-504 |
| Cow position: | chr6:28703444-28703101 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 190-483 |
| Cow position: | chr6:58601763-58602059 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 191-453 |
| Cow position: | chr6:40866040-40865772 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 191-480 |
| Cow position: | chr6:914916-915207 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-483 |
| Cow position: | chr6:50323-50026 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 219 |
| Conread position: | 191-483 |
| Cow position: | chr6:15139893-15139594 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 27, 215 |
| Conread position: | 191-483 |
| Cow position: | chr6:20559819-20559531 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 93 |
| Conread position: | 191-483 |
| Cow position: | chr6:28104577-28104283 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 191-483 |
| Cow position: | chr6:34890842-34890547 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 187 |
| Conread position: | 191-483 |
| Cow position: | chr6:47625342-47625641 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 169 |
| Conread position: | 196-465 |
| Cow position: | chr6:43792283-43792008 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 197-477 |
| Cow position: | chr6:3571884-3572168 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 197-477 |
| Cow position: | chr6:26669572-26669289 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 197-509 |
| Cow position: | chr6:31301596-31301926 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 37, 138 |
| Conread position: | 203-463 |
| Cow position: | chr6:28187524-28187261 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr6:12665020-12664747 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr6:28490269-28489995 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr6:40326713-40326992 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr6:45587247-45587521 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr6:47047885-47047607 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr6:10250309-10250028 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 203-483 |
| Cow position: | chr6:11871359-11871075 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr6:16053405-16053689 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 203-504 |
| Cow position: | chr6:2877388-2877075 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 204-465 |
| Cow position: | chr6:65842912-65843176 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 204-477 |
| Cow position: | chr6:7140042-7139767 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 204-483 |
| Cow position: | chr6:8203489-8203769 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 204-483 |
| Cow position: | chr6:51715830-51716112 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 211-483 |
| Cow position: | chr6:476840-477118 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 211-483 |
| Cow position: | chr6:66546789-66547055 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 217-432 |
| Cow position: | chr6:28766732-28766512 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-463 |
| Cow position: | chr6:25792448-25792198 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 217-477 |
| Cow position: | chr6:5749232-5749498 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-477 |
| Cow position: | chr6:13945220-13945486 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-477 |
| Cow position: | chr6:25215525-25215791 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 217-477 |
| Cow position: | chr6:40379323-40379057 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-483 |
| Cow position: | chr6:703521-703791 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 217-504 |
| Cow position: | chr6:330156-329857 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-504 |
| Cow position: | chr6:65820662-65820362 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 218-483 |
| Cow position: | chr6:41228759-41229023 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 219-480 |
| Cow position: | chr6:21973985-21974246 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 219-483 |
| Cow position: | chr6:3487110-3486845 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 220-465 |
| Cow position: | chr6:8759984-8759737 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 104 |
| Conread position: | 225-477 |
| Cow position: | chr6:40276400-40276656 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 225-480 |
| Cow position: | chr6:27170894-27171156 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 225-483 |
| Cow position: | chr6:13863220-13862956 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 225-483 |
| Cow position: | chr6:24240724-24240984 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 151 |
| Conread position: | 225-483 |
| Cow position: | chr6:39333557-39333293 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 226-477 |
| Cow position: | chr6:58004558-58004809 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 81 |
| Conread position: | 226-496 |
| Cow position: | chr6:15891877-15891612 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 16, 97 |
| Conread position: | 229-483 |
| Cow position: | chr6:184220-183963 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 229-483 |
| Cow position: | chr6:3888191-3887938 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 230-503 |
| Cow position: | chr6:35939336-35939608 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 85 |
| Conread position: | 232-483 |
| Cow position: | chr6:7177964-7177720 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 92 |
| Conread position: | 240-481 |
| Cow position: | chr6:7159953-7160199 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 58, 97 |
| Conread position: | 240-504 |
| Cow position: | chr6:7761164-7760889 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 242-477 |
| Cow position: | chr6:44002009-44002245 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 251-457 |
| Cow position: | chr6:47041864-47041656 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 156 |
| Conread position: | 251-483 |
| Cow position: | chr6:58460973-58460742 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 312-503 |
| Cow position: | chr6:27375515-27375322 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 61 |
Show alignments to all cow chromosomes.