Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 119-477 |
| Cow position: | chr7:62445871-62445488 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 120-483 |
| Cow position: | chr7:13532629-13532243 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 120-483 |
| Cow position: | chr7:21986694-21987073 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 175 |
| Conread position: | 120-483 |
| Cow position: | chr7:45947862-45947483 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 170 |
| Conread position: | 121-452 |
| Cow position: | chr7:3548417-3548073 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 30, 80 |
| Conread position: | 122-417 |
| Cow position: | chr7:26870722-26871027 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 156 |
| Conread position: | 164-465 |
| Cow position: | chr7:21126324-21126028 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 116 |
| Conread position: | 164-483 |
| Cow position: | chr7:14138250-14137922 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 165-467 |
| Cow position: | chr7:45652109-45652415 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 7 |
| Conread position: | 169-465 |
| Cow position: | chr7:24807130-24806834 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 170-503 |
| Cow position: | chr7:996100-996433 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 172-465 |
| Cow position: | chr7:6629941-6629649 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 172-501 |
| Cow position: | chr7:65812181-65812509 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 175-481 |
| Cow position: | chr7:22187246-22186948 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 190-480 |
| Cow position: | chr7:67800200-67800490 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 191-483 |
| Cow position: | chr7:10430051-10429755 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 6, 47 |
| Conread position: | 191-483 |
| Cow position: | chr7:24934183-24933889 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 191-545 |
| Cow position: | chr7:21233633-21233276 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 291 |
| Conread position: | 201-483 |
| Cow position: | chr7:7259905-7260189 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 203-465 |
| Cow position: | chr7:6721527-6721791 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 203-475 |
| Cow position: | chr7:3299782-3299506 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr7:54649286-54649564 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 206-480 |
| Cow position: | chr7:58376511-58376243 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 206-483 |
| Cow position: | chr7:546235-546506 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 217-465 |
| Cow position: | chr7:6628005-6627754 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 217-477 |
| Cow position: | chr7:20060885-20061150 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 247 |
| Conread position: | 217-477 |
| Cow position: | chr7:57084328-57084592 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 6, 109 |
| Conread position: | 217-477 |
| Cow position: | chr7:61578900-61579165 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 217-483 |
| Cow position: | chr7:1609238-1608967 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 217-483 |
| Cow position: | chr7:8143578-8143307 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 194 |
| Conread position: | 217-483 |
| Cow position: | chr7:33404992-33404726 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 217-483 |
| Cow position: | chr7:34487311-34487583 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 217-504 |
| Cow position: | chr7:48805039-48804737 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 219-465 |
| Cow position: | chr7:444856-444608 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 219-465 |
| Cow position: | chr7:55536522-55536276 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 219-480 |
| Cow position: | chr7:61809413-61809675 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 219-480 |
| Cow position: | chr7:64239587-64239325 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 224-426 |
| Cow position: | chr7:66906132-66906339 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 224-465 |
| Cow position: | chr7:38398229-38398470 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 224-476 |
| Cow position: | chr7:47974895-47974635 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 224-483 |
| Cow position: | chr7:25440909-25441167 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 159 |
| Conread position: | 224-483 |
| Cow position: | chr7:33332966-33333233 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 186 |
| Conread position: | 224-483 |
| Cow position: | chr7:55041081-55040816 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 237-477 |
| Cow position: | chr7:23250039-23250284 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 238-483 |
| Cow position: | chr7:43396993-43396743 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 203 |
| Conread position: | 242-483 |
| Cow position: | chr7:11462713-11462469 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 243-477 |
| Cow position: | chr7:66070699-66070466 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 154 |
| Conread position: | 245-477 |
| Cow position: | chr7:33311514-33311283 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 129 |
| Conread position: | 251-483 |
| Cow position: | chr7:3126124-3126359 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 252-503 |
| Cow position: | chr7:29471910-29472162 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 310-503 |
| Cow position: | chr7:66214226-66214026 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 51 |
Show alignments to all cow chromosomes.