Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 118-483 |
| Cow position: | chr8:17312547-17312910 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 120-470 |
| Cow position: | chr8:45184880-45185247 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 35, 181 |
| Conread position: | 120-483 |
| Cow position: | chr8:3786101-3786486 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 33, 207 |
| Conread position: | 120-483 |
| Cow position: | chr8:47887330-47887700 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 56 |
| Conread position: | 120-502 |
| Cow position: | chr8:46218286-46217879 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 35, 192 |
| Conread position: | 127-461 |
| Cow position: | chr8:51857452-51857800 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 229 |
| Conread position: | 127-476 |
| Cow position: | chr8:27718397-27718743 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 26, 106 |
| Conread position: | 127-483 |
| Cow position: | chr8:9539219-9538853 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 150 |
| Conread position: | 159-478 |
| Cow position: | chr8:31984663-31984985 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 164-427 |
| Cow position: | chr8:42418902-42418639 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 164-477 |
| Cow position: | chr8:36634979-36634659 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 164-483 |
| Cow position: | chr8:56884067-56884383 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 165-483 |
| Cow position: | chr8:12313870-12313547 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 166-504 |
| Cow position: | chr8:76048-75718 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 168-477 |
| Cow position: | chr8:34269305-34269615 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 191-453 |
| Cow position: | chr8:45794194-45793926 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 191-483 |
| Cow position: | chr8:4687959-4688257 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 191-483 |
| Cow position: | chr8:8912041-8912337 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 27, 128 |
| Conread position: | 191-483 |
| Cow position: | chr8:10742090-10741789 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr8:12450601-12450898 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 219 |
| Conread position: | 191-483 |
| Cow position: | chr8:35470859-35471158 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr8:38392186-38392483 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 39, 89 |
| Conread position: | 191-483 |
| Cow position: | chr8:39194656-39194357 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 196-482 |
| Cow position: | chr8:21584751-21585044 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 196-483 |
| Cow position: | chr8:50960046-50959757 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 203 |
| Conread position: | 196-487 |
| Cow position: | chr8:11834083-11834386 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 197-503 |
| Cow position: | chr8:10749919-10750231 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 203-453 |
| Cow position: | chr8:37654286-37654033 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 203-477 |
| Cow position: | chr8:2887325-2887602 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr8:14255755-14256033 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr8:14256652-14256930 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr8:14631091-14630813 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr8:34349243-34349521 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr8:37655983-37655705 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 204-483 |
| Cow position: | chr8:47660748-47660465 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 217-477 |
| Cow position: | chr8:33325637-33325901 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 22, 107 |
| Conread position: | 217-477 |
| Cow position: | chr8:39820036-39820302 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-477 |
| Cow position: | chr8:45691424-45691173 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 217-480 |
| Cow position: | chr8:1347666-1347397 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-483 |
| Cow position: | chr8:5017771-5018034 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 217-483 |
| Cow position: | chr8:19052036-19052308 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 217-483 |
| Cow position: | chr8:25523985-25524248 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 62 |
| Conread position: | 217-483 |
| Cow position: | chr8:50995372-50995643 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 217-503 |
| Cow position: | chr8:7162482-7162774 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 219-464 |
| Cow position: | chr8:39835477-39835715 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 219-483 |
| Cow position: | chr8:42485507-42485767 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 220-483 |
| Cow position: | chr8:21157203-21156933 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 220-483 |
| Cow position: | chr8:24914728-24914465 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 220-498 |
| Cow position: | chr8:41644095-41643817 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 220-501 |
| Cow position: | chr8:32317954-32317674 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 99 |
| Conread position: | 221-426 |
| Cow position: | chr8:47454011-47453800 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 224-477 |
| Cow position: | chr8:32436491-32436229 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 224-480 |
| Cow position: | chr8:37932687-37932948 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 258 |
| Conread position: | 224-483 |
| Cow position: | chr8:29008222-29008474 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 6, 60 |
| Conread position: | 225-453 |
| Cow position: | chr8:10365319-10365095 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 225-482 |
| Cow position: | chr8:34109475-34109735 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 225-483 |
| Cow position: | chr8:14927290-14927028 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 225-483 |
| Cow position: | chr8:33589976-33590239 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 230-503 |
| Cow position: | chr8:41247775-41248055 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 237-480 |
| Cow position: | chr8:53428094-53428341 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 240-476 |
| Cow position: | chr8:4941187-4941418 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 242-477 |
| Cow position: | chr8:25377591-25377827 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 57, 153 |
| Conread position: | 250-470 |
| Cow position: | chr8:2168899-2168677 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 262-476 |
| Cow position: | chr8:21250858-21251075 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 263-480 |
| Cow position: | chr8:19332207-19332426 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 103 |
| Conread position: | 276-501 |
| Cow position: | chr8:32522614-32522842 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 278-477 |
| Cow position: | chr8:51068349-51068147 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.