Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 120-434 |
| Cow position: | chr9:47003301-47003636 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 120-476 |
| Cow position: | chr9:9014199-9014572 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 35, 221 |
| Conread position: | 120-477 |
| Cow position: | chr9:64015532-64015169 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 120-501 |
| Cow position: | chr9:54925661-54926060 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 35, 237 |
| Conread position: | 123-483 |
| Cow position: | chr9:20939437-20939820 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 164-483 |
| Cow position: | chr9:27036082-27036409 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 6, 239 |
| Conread position: | 164-483 |
| Cow position: | chr9:32970126-32970451 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 6, 163 |
| Conread position: | 165-484 |
| Cow position: | chr9:13119118-13118797 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 169-483 |
| Cow position: | chr9:26083383-26083051 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 200 |
| Conread position: | 172-453 |
| Cow position: | chr9:7105231-7104950 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 172-477 |
| Cow position: | chr9:47043155-47043463 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 172-480 |
| Cow position: | chr9:19158342-19158027 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 182-483 |
| Cow position: | chr9:10547866-10548158 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 194, 35 |
| Conread position: | 191-426 |
| Cow position: | chr9:59481587-59481347 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 191-483 |
| Cow position: | chr9:7003940-7004242 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr9:22654789-22655088 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr9:37161599-37161305 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 39, 134 |
| Conread position: | 195-483 |
| Cow position: | chr9:42310893-42311187 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 197-471 |
| Cow position: | chr9:221315-221037 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 201-504 |
| Cow position: | chr9:1250774-1250460 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 203-465 |
| Cow position: | chr9:28679200-28679455 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr9:25034336-25034058 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr9:44384488-44384766 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr9:51211909-51212186 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 204-470 |
| Cow position: | chr9:21410527-21410800 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 204-483 |
| Cow position: | chr9:17063157-17062875 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 7 |
| Conread position: | 206-483 |
| Cow position: | chr9:22192504-22192783 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 12, 192 |
| Conread position: | 206-483 |
| Cow position: | chr9:26567828-26568111 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 216-477 |
| Cow position: | chr9:31065956-31066221 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 217-463 |
| Cow position: | chr9:8781672-8781422 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 224 |
| Conread position: | 217-465 |
| Cow position: | chr9:10937832-10938082 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 160 |
| Conread position: | 217-465 |
| Cow position: | chr9:28023042-28023290 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 217-470 |
| Cow position: | chr9:2212377-2212635 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 217-477 |
| Cow position: | chr9:7060839-7060573 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 217-477 |
| Cow position: | chr9:44819381-44819639 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 217-477 |
| Cow position: | chr9:50094000-50093734 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-477 |
| Cow position: | chr9:59537335-59537603 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 217-483 |
| Cow position: | chr9:5005223-5005494 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 217-483 |
| Cow position: | chr9:18508586-18508317 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 13, 160 |
| Conread position: | 219-483 |
| Cow position: | chr9:30673624-30673888 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 220-480 |
| Cow position: | chr9:37969967-37969703 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 222-481 |
| Cow position: | chr9:31045882-31045623 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 35 |
| Conread position: | 224-477 |
| Cow position: | chr9:17304731-17304473 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 6, 238 |
| Conread position: | 224-477 |
| Cow position: | chr9:50791957-50792218 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 224-483 |
| Cow position: | chr9:3309860-3310123 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 224-483 |
| Cow position: | chr9:4533737-4534002 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 6, 214 |
| Conread position: | 225-483 |
| Cow position: | chr9:51180934-51180671 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 5, 198 |
| Conread position: | 233-481 |
| Cow position: | chr9:47545454-47545703 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 242-453 |
| Cow position: | chr9:3004979-3004766 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 242-459 |
| Cow position: | chr9:26737178-26737394 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 242-477 |
| Cow position: | chr9:30828006-30828244 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 242-483 |
| Cow position: | chr9:38677412-38677653 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 243-504 |
| Cow position: | chr9:27935646-27935918 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 268-482 |
| Cow position: | chr9:4717467-4717676 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 312-477 |
| Cow position: | chr9:10976451-10976618 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.