Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 482-780 |
| Cow position: | chr12:35771186-35770858 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 484-615 |
| Cow position: | chr12:4596300-4596430 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 484-747 |
| Cow position: | chr12:4866659-4866938 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 16 |
| Conread position: | 485-615 |
| Cow position: | chr12:46143660-46143790 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 487-702 |
| Cow position: | chr12:8943380-8943151 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 133, 48 |
| Conread position: | 488-715 |
| Cow position: | chr12:42698386-42698159 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 76 |
| Conread position: | 490-614 |
| Cow position: | chr12:38511997-38511869 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 490-703 |
| Cow position: | chr12:27562988-27562768 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 71, 165 |
| Conread position: | 490-715 |
| Cow position: | chr12:30753564-30753804 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 130, 98 |
| Conread position: | 491-623 |
| Cow position: | chr12:19664687-19664556 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 106 |
| Conread position: | 491-701 |
| Cow position: | chr12:23855679-23855904 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 86, 203 |
| Conread position: | 491-747 |
| Cow position: | chr12:24639496-24639752 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 87, 107 |
| Conread position: | 491-790 |
| Cow position: | chr12:20479481-20479169 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 90, 55 |
| Conread position: | 492-610 |
| Cow position: | chr12:3906316-3906437 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 492-615 |
| Cow position: | chr12:30476325-30476450 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 492-704 |
| Cow position: | chr12:29969424-29969654 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 492-707 |
| Cow position: | chr12:9413939-9413730 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 492-715 |
| Cow position: | chr12:25444769-25445000 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 81, 65 |
| Conread position: | 492-747 |
| Cow position: | chr12:4768770-4769043 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 492-747 |
| Cow position: | chr12:30194550-30194818 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 87, 230 |
| Conread position: | 492-787 |
| Cow position: | chr12:38774396-38774077 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 493-612 |
| Cow position: | chr12:20326618-20326737 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 493-612 |
| Cow position: | chr12:44559433-44559553 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 493-615 |
| Cow position: | chr12:18021439-18021560 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 89 |
| Conread position: | 493-616 |
| Cow position: | chr12:12300765-12300884 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 493-630 |
| Cow position: | chr12:5714472-5714613 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 493-693 |
| Cow position: | chr12:8869033-8868818 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 493-693 |
| Cow position: | chr12:40110230-40110435 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 493-703 |
| Cow position: | chr12:34473780-34473551 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 493-706 |
| Cow position: | chr12:9229638-9229423 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 81, 48 |
| Conread position: | 493-747 |
| Cow position: | chr12:34161260-34161528 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 91, 77 |
| Conread position: | 493-786 |
| Cow position: | chr12:15050773-15050458 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 88, 190 |
| Conread position: | 494-615 |
| Cow position: | chr12:29921937-29921817 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 496-745 |
| Cow position: | chr12:48415673-48415397 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 56 |
| Conread position: | 497-702 |
| Cow position: | chr12:4085764-4085965 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 114, 43 |
| Conread position: | 509-703 |
| Cow position: | chr12:7311256-7311455 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 70 |
| Conread position: | 509-747 |
| Cow position: | chr12:11587633-11587895 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 515-725 |
| Cow position: | chr12:36012749-36012535 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 208 |
| Conread position: | 520-780 |
| Cow position: | chr12:37008833-37008544 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 575-787 |
| Cow position: | chr12:43610919-43610700 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 604-771 |
| Cow position: | chr12:26945860-26945688 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 605-786 |
| Cow position: | chr12:21903759-21903940 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 148 |
| Conread position: | 608-779 |
| Cow position: | chr12:22859442-22859615 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 122 |
| Conread position: | 609-771 |
| Cow position: | chr12:15509782-15509614 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 96, 76 |
| Conread position: | 609-771 |
| Cow position: | chr12:24391299-24391459 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 612-771 |
| Cow position: | chr12:43644184-43644019 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 612-771 |
| Cow position: | chr12:43645515-43645350 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 614-746 |
| Cow position: | chr12:24181131-24181266 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 614-747 |
| Cow position: | chr12:6666555-6666685 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 618-745 |
| Cow position: | chr12:6958207-6958341 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 622-747 |
| Cow position: | chr12:11068411-11068538 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 622-783 |
| Cow position: | chr12:33873386-33873232 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 627-795 |
| Cow position: | chr12:41159585-41159763 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.