Cow genome map

Conread name: Ss1.1-Utr1-UTR010038D04.5

Conread position: 485-746
Cow position: chr13:11202136-11201863 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 93, 49

Conread position: 488-615
Cow position: chr13:51108598-51108470 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 490-615
Cow position: chr13:1779935-1779808 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 30, 101

Conread position: 490-618
Cow position: chr13:25249051-25249182 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 93, 66

Conread position: 490-620
Cow position: chr13:55947878-55947747 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 490-623
Cow position: chr13:20649877-20650015 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 490-736
Cow position: chr13:2192816-2192570 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 217, 157

Conread position: 490-736
Cow position: chr13:30026218-30025962 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 88, 163

Conread position: 490-782
Cow position: chr13:6974266-6973942 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 241
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 94, 212

Conread position: 490-787
Cow position: chr13:40722602-40722909 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 63, 89

Conread position: 491-615
Cow position: chr13:2414133-2414008 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 491-615
Cow position: chr13:18243966-18243841 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 491-715
Cow position: chr13:51821787-51822012 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 125, 14

Conread position: 491-758
Cow position: chr13:4552906-4552639 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 187
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 81, 49

Conread position: 492-614
Cow position: chr13:16024694-16024569 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 492-615
Cow position: chr13:25381064-25380942 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 492-615
Cow position: chr13:46181895-46181771 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 492-615
Cow position: chr13:54093848-54093724 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 492-620
Cow position: chr13:37517033-37517164 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 492-623
Cow position: chr13:24230313-24230185 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 94, 81

Conread position: 492-626
Cow position: chr13:45725999-45725863 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 86, 0

Conread position: 492-702
Cow position: chr13:6153679-6153912 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 84, 0

Conread position: 492-703
Cow position: chr13:57475313-57475533 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 82, 68

Conread position: 492-709
Cow position: chr13:26743229-26743013 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 61, 145

Conread position: 492-715
Cow position: chr13:9900252-9900019 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 86, 185

Conread position: 492-715
Cow position: chr13:13465685-13465904 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 91, 34

Conread position: 492-746
Cow position: chr13:20378232-20378497 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 81, 135

Conread position: 492-781
Cow position: chr13:24715347-24715036 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 86, 238

Conread position: 492-787
Cow position: chr13:23270108-23270409 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 230
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 89, 69

Conread position: 492-787
Cow position: chr13:52749375-52749688 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 121, 40

Conread position: 493-615
Cow position: chr13:20128768-20128645 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 493-620
Cow position: chr13:563040-563169 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 493-623
Cow position: chr13:17158772-17158905 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 493-623
Cow position: chr13:25531685-25531821 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 493-701
Cow position: chr13:311533-311313 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 493-715
Cow position: chr13:61990234-61990462 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 124, 188

Conread position: 493-718
Cow position: chr13:6389483-6389253 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 61, 128

Conread position: 493-745
Cow position: chr13:15162555-15162810 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 29

Conread position: 493-747
Cow position: chr13:6079316-6079579 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 97, 77

Conread position: 493-747
Cow position: chr13:8362652-8362923 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 39

Conread position: 493-747
Cow position: chr13:11260371-11260101 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 84, 37

Conread position: 493-747
Cow position: chr13:14544221-14543955 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 35, 132

Conread position: 493-747
Cow position: chr13:14576309-14576039 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 88, 49

Conread position: 493-747
Cow position: chr13:15192787-15193064 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 112, 0

Conread position: 493-771
Cow position: chr13:5758238-5758541 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 87, 230

Conread position: 493-779
Cow position: chr13:1569026-1568717 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 85, 0

Conread position: 493-786
Cow position: chr13:26480110-26480423 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 14

Conread position: 493-787
Cow position: chr13:12448890-12449206 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 27, 194

Conread position: 493-787
Cow position: chr13:47964094-47964392 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 124, 20

Conread position: 493-787
Cow position: chr13:51940839-51940519 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 224
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 84, 234

Conread position: 494-620
Cow position: chr13:15869224-15869097 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 494-715
Cow position: chr13:23960711-23960942 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 494-747
Cow position: chr13:4664764-4665026 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 91, 207

Conread position: 495-623
Cow position: chr13:16711727-16711598 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 495-623
Cow position: chr13:61170620-61170747 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 495-746
Cow position: chr13:10845696-10845443 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 85, 210

Conread position: 495-746
Cow position: chr13:19223746-19223476 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 183
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 125, 0

Conread position: 501-679
Cow position: chr13:8524521-8524721 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 502-747
Cow position: chr13:45593996-45593747 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 165
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 167

Conread position: 509-714
Cow position: chr13:17110306-17110086 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 69, 16

Conread position: 509-746
Cow position: chr13:20473595-20473850 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 84, 228

Conread position: 522-715
Cow position: chr13:29907910-29908091 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 181, 48

Conread position: 546-747
Cow position: chr13:25561653-25561452 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 79, 36

Conread position: 547-787
Cow position: chr13:8233044-8232795 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 71, 34

Conread position: 586-713
Cow position: chr13:41616057-41616184 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 64

Conread position: 586-779
Cow position: chr13:15060634-15060436 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 127

Conread position: 591-767
Cow position: chr13:47193384-47193200 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 123

Conread position: 600-771
Cow position: chr13:22990658-22990833 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 109, 156

Conread position: 609-771
Cow position: chr13:2233339-2233508 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 609-771
Cow position: chr13:2907266-2907097 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 0

Conread position: 609-771
Cow position: chr13:42203992-42203822 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 96, 0

Conread position: 609-771
Cow position: chr13:57929603-57929772 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 0

Conread position: 609-785
Cow position: chr13:3278002-3278185 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 609-787
Cow position: chr13:34694044-34694228 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 618-747
Cow position: chr13:7104613-7104479 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 618-747
Cow position: chr13:34261190-34261059 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 618-792
Cow position: chr13:28439368-28439186 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 621-787
Cow position: chr13:28071827-28071650 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 622-785
Cow position: chr13:18491550-18491384 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 623-745
Cow position: chr13:57446164-57446287 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 11, 84

Conread position: 623-788
Cow position: chr13:42614037-42613865 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 626-746
Cow position: chr13:16163532-16163411 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 626-749
Cow position: chr13:6091458-6091590 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 626-787
Cow position: chr13:11321667-11321825 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 629-783
Cow position: chr13:54652375-54652530 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 639-746
Cow position: chr13:10522874-10522764 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 655-781
Cow position: chr13:56275453-56275580 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 657-779
Cow position: chr13:25018502-25018382 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 0

Show alignments to all cow chromosomes.