Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 484-770 |
| Cow position: | chr14:1859447-1859746 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 92, 74 |
| Conread position: | 486-715 |
| Cow position: | chr14:36453464-36453701 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 487-703 |
| Cow position: | chr14:19863271-19863504 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 89, 30 |
| Conread position: | 487-779 |
| Cow position: | chr14:4202928-4203248 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 306 |
| Conread position: | 490-703 |
| Cow position: | chr14:21964281-21964067 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 130, 76 |
| Conread position: | 490-714 |
| Cow position: | chr14:24981617-24981377 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 491-747 |
| Cow position: | chr14:8786390-8786657 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 120, 241 |
| Conread position: | 491-781 |
| Cow position: | chr14:30662148-30661862 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 100, 90 |
| Conread position: | 492-610 |
| Cow position: | chr14:37467601-37467721 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 492-612 |
| Cow position: | chr14:22966913-22966794 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 492-623 |
| Cow position: | chr14:33643622-33643752 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 492-698 |
| Cow position: | chr14:18904451-18904671 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 93, 43 |
| Conread position: | 492-732 |
| Cow position: | chr14:6175743-6175497 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 93, 66 |
| Conread position: | 492-734 |
| Cow position: | chr14:17755721-17755466 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 492-745 |
| Cow position: | chr14:13810098-13809836 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 93, 230 |
| Conread position: | 492-747 |
| Cow position: | chr14:7959929-7959678 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 492-747 |
| Cow position: | chr14:40230478-40230757 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 88, 74 |
| Conread position: | 492-753 |
| Cow position: | chr14:41128053-41127779 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 126, 13 |
| Conread position: | 493-614 |
| Cow position: | chr14:41966400-41966281 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 493-615 |
| Cow position: | chr14:7482215-7482092 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 493-615 |
| Cow position: | chr14:33828320-33828198 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 493-623 |
| Cow position: | chr14:19129669-19129534 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 493-715 |
| Cow position: | chr14:25779251-25779020 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 96, 42 |
| Conread position: | 493-716 |
| Cow position: | chr14:14317041-14316805 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 93, 22 |
| Conread position: | 493-736 |
| Cow position: | chr14:47672725-47672986 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 493-745 |
| Cow position: | chr14:21535161-21535421 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 493-746 |
| Cow position: | chr14:4877072-4877346 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 493-747 |
| Cow position: | chr14:10721569-10721822 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 98, 130 |
| Conread position: | 493-747 |
| Cow position: | chr14:28115026-28115311 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 493-767 |
| Cow position: | chr14:49021743-49022029 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 122, 73 |
| Conread position: | 493-781 |
| Cow position: | chr14:33247274-33247578 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 119, 53 |
| Conread position: | 493-783 |
| Cow position: | chr14:16344009-16344306 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 127, 73 |
| Conread position: | 493-787 |
| Cow position: | chr14:19618592-19618909 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 493-787 |
| Cow position: | chr14:46965719-46965431 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 127, 71 |
| Conread position: | 494-735 |
| Cow position: | chr14:44878628-44878874 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 142 |
| Conread position: | 494-747 |
| Cow position: | chr14:38143952-38144230 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 126, 36 |
| Conread position: | 494-758 |
| Cow position: | chr14:14466318-14466590 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 88, 132 |
| Conread position: | 494-780 |
| Cow position: | chr14:43046307-43046014 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 85, 162 |
| Conread position: | 494-784 |
| Cow position: | chr14:38747826-38747518 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 7, 112 |
| Conread position: | 495-747 |
| Cow position: | chr14:18309139-18309420 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 82, 240 |
| Conread position: | 497-747 |
| Cow position: | chr14:29592568-29592836 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 149 |
| Conread position: | 498-715 |
| Cow position: | chr14:6226472-6226696 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 501-787 |
| Cow position: | chr14:11056588-11056901 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 74 |
| Conread position: | 509-615 |
| Cow position: | chr14:3564425-3564320 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 510-632 |
| Cow position: | chr14:22381409-22381533 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 115 |
| Conread position: | 536-787 |
| Cow position: | chr14:41267634-41267886 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 84, 23 |
| Conread position: | 571-737 |
| Cow position: | chr14:15228601-15228431 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 577-747 |
| Cow position: | chr14:8949710-8949531 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 577-747 |
| Cow position: | chr14:36151372-36151204 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 124, 37 |
| Conread position: | 579-747 |
| Cow position: | chr14:40952330-40952146 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 582-764 |
| Cow position: | chr14:37479420-37479232 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 71 |
| Conread position: | 586-747 |
| Cow position: | chr14:27609218-27609055 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 605-787 |
| Cow position: | chr14:8036353-8036163 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 609-771 |
| Cow position: | chr14:11917181-11917015 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 609-782 |
| Cow position: | chr14:3923932-3923752 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 609-786 |
| Cow position: | chr14:38458618-38458434 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 611-768 |
| Cow position: | chr14:31893602-31893439 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 97, 61 |
| Conread position: | 612-771 |
| Cow position: | chr14:6595640-6595474 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 612-785 |
| Cow position: | chr14:24880584-24880763 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 617-768 |
| Cow position: | chr14:42153388-42153547 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 620-746 |
| Cow position: | chr14:24387455-24387329 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 622-747 |
| Cow position: | chr14:44084478-44084596 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 624-744 |
| Cow position: | chr14:25912660-25912537 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 626-779 |
| Cow position: | chr14:19487302-19487151 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 149, 79 |
| Conread position: | 627-781 |
| Cow position: | chr14:40806605-40806761 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 122, 77 |
| Conread position: | 654-788 |
| Cow position: | chr14:42633332-42633198 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 40 |
Show alignments to all cow chromosomes.