Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 480-623 |
| Cow position: | chr15:35204928-35205071 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 8, 106 |
| Conread position: | 482-715 |
| Cow position: | chr15:5683357-5683114 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 8 |
| Conread position: | 482-729 |
| Cow position: | chr15:12785641-12785380 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 119, 76 |
| Conread position: | 486-716 |
| Cow position: | chr15:608358-608111 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 130, 232 |
| Conread position: | 487-781 |
| Cow position: | chr15:34284199-34284518 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 61 |
| Conread position: | 487-783 |
| Cow position: | chr15:9107248-9106932 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 91, 210 |
| Conread position: | 488-717 |
| Cow position: | chr15:26911865-26912110 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 490-615 |
| Cow position: | chr15:10845929-10845802 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 490-616 |
| Cow position: | chr15:29861534-29861404 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 490-623 |
| Cow position: | chr15:16936635-16936773 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 490-630 |
| Cow position: | chr15:35112672-35112813 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 134 |
| Conread position: | 490-755 |
| Cow position: | chr15:49922346-49922054 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 490-788 |
| Cow position: | chr15:37381831-37381506 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 126, 98 |
| Conread position: | 491-623 |
| Cow position: | chr15:16657700-16657566 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 491-716 |
| Cow position: | chr15:5930099-5929860 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 126, 79 |
| Conread position: | 491-732 |
| Cow position: | chr15:9781673-9781415 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 491-746 |
| Cow position: | chr15:19403189-19402933 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 145 |
| Conread position: | 492-615 |
| Cow position: | chr15:4418195-4418317 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 492-615 |
| Cow position: | chr15:21522994-21522869 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 492-615 |
| Cow position: | chr15:34144948-34145071 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 96 |
| Conread position: | 492-701 |
| Cow position: | chr15:5726531-5726304 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 492-709 |
| Cow position: | chr15:10608098-10608334 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 87, 206 |
| Conread position: | 492-714 |
| Cow position: | chr15:13554561-13554319 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 492-747 |
| Cow position: | chr15:4485348-4485075 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 492-747 |
| Cow position: | chr15:12723294-12723011 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 492-768 |
| Cow position: | chr15:19119397-19119687 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 82, 140 |
| Conread position: | 492-783 |
| Cow position: | chr15:36773491-36773797 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 53, 189 |
| Conread position: | 492-787 |
| Cow position: | chr15:50664279-50664580 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 266 |
| Conread position: | 493-613 |
| Cow position: | chr15:36724973-36725093 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 493-619 |
| Cow position: | chr15:11362971-11363099 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 89 |
| Conread position: | 493-703 |
| Cow position: | chr15:34206982-34207210 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 493-707 |
| Cow position: | chr15:21388962-21389191 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 493-736 |
| Cow position: | chr15:22532444-22532191 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 112, 77 |
| Conread position: | 493-746 |
| Cow position: | chr15:22531863-22531601 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 493-747 |
| Cow position: | chr15:5234797-5235064 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 493-747 |
| Cow position: | chr15:10245798-10246068 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 493-747 |
| Cow position: | chr15:14020679-14020424 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 81, 219 |
| Conread position: | 493-747 |
| Cow position: | chr15:20370250-20370525 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 493-778 |
| Cow position: | chr15:39599648-39599337 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 124, 264 |
| Conread position: | 493-781 |
| Cow position: | chr15:49274158-49273846 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 124, 201 |
| Conread position: | 494-704 |
| Cow position: | chr15:22136887-22136666 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 83, 41 |
| Conread position: | 494-716 |
| Cow position: | chr15:32287550-32287777 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 494-746 |
| Cow position: | chr15:49230140-49230385 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 494-757 |
| Cow position: | chr15:21893987-21893696 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 495-623 |
| Cow position: | chr15:26919071-26919200 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 495-748 |
| Cow position: | chr15:40798224-40798496 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 495-779 |
| Cow position: | chr15:50322800-50322497 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 71, 225 |
| Conread position: | 501-747 |
| Cow position: | chr15:13846393-13846638 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 194, 24 |
| Conread position: | 501-787 |
| Cow position: | chr15:5408711-5409016 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 510-703 |
| Cow position: | chr15:43788441-43788239 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 76, 49 |
| Conread position: | 512-779 |
| Cow position: | chr15:30983635-30983908 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 514-787 |
| Cow position: | chr15:19950659-19950365 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 520-702 |
| Cow position: | chr15:52377706-52377522 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 528-715 |
| Cow position: | chr15:26896537-26896730 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 529-779 |
| Cow position: | chr15:41527806-41528080 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 600-784 |
| Cow position: | chr15:40562374-40562564 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 108, 173 |
| Conread position: | 609-771 |
| Cow position: | chr15:6649293-6649124 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 609-771 |
| Cow position: | chr15:36649661-36649829 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 149 |
| Conread position: | 609-771 |
| Cow position: | chr15:39667941-39668107 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 609-787 |
| Cow position: | chr15:10786084-10785896 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 611-771 |
| Cow position: | chr15:52463808-52463975 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 614-747 |
| Cow position: | chr15:38820764-38820629 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 616-787 |
| Cow position: | chr15:32226809-32226983 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 133, 11 |
| Conread position: | 618-747 |
| Cow position: | chr15:12913435-12913572 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 618-747 |
| Cow position: | chr15:26529953-26529822 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 618-764 |
| Cow position: | chr15:32977783-32977927 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 100 |
| Conread position: | 618-768 |
| Cow position: | chr15:41582943-41582795 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 5, 73 |
| Conread position: | 618-781 |
| Cow position: | chr15:28823756-28823922 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 618-785 |
| Cow position: | chr15:25788446-25788271 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 622-747 |
| Cow position: | chr15:36353726-36353596 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 622-779 |
| Cow position: | chr15:36458144-36458293 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 623-771 |
| Cow position: | chr15:25201980-25201821 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 646-771 |
| Cow position: | chr15:27927170-27927038 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 653-778 |
| Cow position: | chr15:14353135-14353010 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 34 |
Show alignments to all cow chromosomes.