Cow genome map

Conread name: Ss1.1-Utr1-UTR010038D04.5

Conread position: 72-250
Cow position: chr16:18155493-18155670 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 55, 65

Conread position: 482-623
Cow position: chr16:6692730-6692586 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 482-746
Cow position: chr16:11660578-11660308 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 14, 138

Conread position: 482-758
Cow position: chr16:30909047-30908776 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 105, 19

Conread position: 484-715
Cow position: chr16:10945557-10945315 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 89, 221

Conread position: 484-749
Cow position: chr16:56796792-56796510 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 92, 244

Conread position: 486-737
Cow position: chr16:35188130-35188393 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 94, 103

Conread position: 486-758
Cow position: chr16:22984634-22984923 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 87, 17

Conread position: 487-747
Cow position: chr16:33267593-33267884 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 489-747
Cow position: chr16:29095816-29096080 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 105, 55

Conread position: 490-615
Cow position: chr16:22868293-22868171 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 86, 59

Conread position: 490-623
Cow position: chr16:24672475-24672342 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 86, 45

Conread position: 490-707
Cow position: chr16:8933544-8933310 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 490-713
Cow position: chr16:52133633-52133394 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 126, 88

Conread position: 490-787
Cow position: chr16:8231471-8231162 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 214
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 87, 79

Conread position: 490-794
Cow position: chr16:53509103-53508777 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 91, 74

Conread position: 491-615
Cow position: chr16:11775168-11775045 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 491-615
Cow position: chr16:31159691-31159565 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 491-716
Cow position: chr16:51246830-51247061 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 44

Conread position: 491-747
Cow position: chr16:29766218-29766483 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 112, 91

Conread position: 492-612
Cow position: chr16:30209637-30209754 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 492-615
Cow position: chr16:9790749-9790624 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 492-615
Cow position: chr16:44973377-44973501 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 492-615
Cow position: chr16:56912835-56912707 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 492-623
Cow position: chr16:820130-820265 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 492-623
Cow position: chr16:14699802-14699936 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 492-623
Cow position: chr16:42340078-42340211 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 91, 40

Conread position: 492-633
Cow position: chr16:30143323-30143181 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 492-689
Cow position: chr16:9136058-9136267 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 492-715
Cow position: chr16:17626812-17627055 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 85, 215

Conread position: 492-716
Cow position: chr16:9933041-9933269 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 85, 27

Conread position: 492-719
Cow position: chr16:30136012-30135780 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 86, 215

Conread position: 492-747
Cow position: chr16:23472629-23472905 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 86, 220

Conread position: 492-747
Cow position: chr16:39165126-39165396 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 84, 37

Conread position: 492-747
Cow position: chr16:41530409-41530144 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 80, 227

Conread position: 492-787
Cow position: chr16:11957702-11957372 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 87, 0

Conread position: 492-787
Cow position: chr16:38243780-38243457 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 84, 285

Conread position: 493-615
Cow position: chr16:814777-814896 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 493-615
Cow position: chr16:39417235-39417113 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 493-615
Cow position: chr16:44676755-44676881 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 493-616
Cow position: chr16:50688406-50688529 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 95, 44

Conread position: 493-620
Cow position: chr16:26068814-26068944 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 493-623
Cow position: chr16:16280562-16280433 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 493-694
Cow position: chr16:16402441-16402230 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 493-703
Cow position: chr16:21905048-21905259 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 95, 42

Conread position: 493-714
Cow position: chr16:43275904-43276142 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 82, 0

Conread position: 493-715
Cow position: chr16:7498943-7499178 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 105, 0

Conread position: 493-715
Cow position: chr16:15960409-15960164 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 87, 0

Conread position: 493-716
Cow position: chr16:10773015-10773247 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 127, 0

Conread position: 493-746
Cow position: chr16:18205843-18206117 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 90, 0

Conread position: 493-746
Cow position: chr16:45676970-45676709 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 177
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 87, 211

Conread position: 493-747
Cow position: chr16:14685507-14685228 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 123, 89

Conread position: 493-747
Cow position: chr16:14754440-14754165 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 118, 90

Conread position: 493-747
Cow position: chr16:29557745-29557461 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 124, 0

Conread position: 493-747
Cow position: chr16:42242234-42241960 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 10, 184

Conread position: 493-747
Cow position: chr16:56082480-56082199 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 124, 0

Conread position: 493-749
Cow position: chr16:8323100-8322826 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 87, 215

Conread position: 493-781
Cow position: chr16:13713030-13712736 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 200
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 9, 43

Conread position: 494-706
Cow position: chr16:43801035-43800803 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 90, 199

Conread position: 494-747
Cow position: chr16:3614629-3614900 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 84, 261

Conread position: 494-747
Cow position: chr16:54226715-54226452 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 89, 230

Conread position: 502-747
Cow position: chr16:22772870-22773136 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 24

Conread position: 505-716
Cow position: chr16:53830691-53830465 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 509-747
Cow position: chr16:46552705-46552956 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 75, 45

Conread position: 525-747
Cow position: chr16:50931602-50931370 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 66, 193

Conread position: 527-746
Cow position: chr16:4192508-4192269 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 538-787
Cow position: chr16:4911501-4911245 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 107

Conread position: 539-787
Cow position: chr16:8768731-8768986 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 79, 49

Conread position: 542-715
Cow position: chr16:8206134-8205959 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 27

Conread position: 600-785
Cow position: chr16:6266334-6266144 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 105, 173

Conread position: 600-787
Cow position: chr16:20253204-20253006 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 600-787
Cow position: chr16:31626274-31626080 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 609-771
Cow position: chr16:10809458-10809627 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 609-771
Cow position: chr16:23722024-23721855 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 609-785
Cow position: chr16:53406403-53406587 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 614-746
Cow position: chr16:13252286-13252157 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 614-809
Cow position: chr16:30939967-30940164 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 91, 69

Conread position: 617-747
Cow position: chr16:33629451-33629583 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 5

Conread position: 618-747
Cow position: chr16:49860264-49860397 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 5, 70

Conread position: 618-747
Cow position: chr16:51143826-51143962 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 621-747
Cow position: chr16:11359182-11359310 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 91, 0

Conread position: 622-747
Cow position: chr16:30646544-30646672 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 622-748
Cow position: chr16:51697117-51697239 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 622-780
Cow position: chr16:17474797-17474961 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 124, 56

Conread position: 622-781
Cow position: chr16:34484538-34484697 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 32

Conread position: 622-787
Cow position: chr16:19053851-19053679 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 78, 0

Conread position: 623-746
Cow position: chr16:30211487-30211611 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 623-768
Cow position: chr16:16163673-16163520 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 623-771
Cow position: chr16:45233395-45233547 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 28

Conread position: 626-781
Cow position: chr16:36922703-36922543 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 78, 150

Conread position: 639-786
Cow position: chr16:51043701-51043851 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 92

Conread position: 644-782
Cow position: chr16:13316816-13316687 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 704-1516
Cow position: chr16:18156287-18157111 (view UCSC Genome Browser custom track)
Alignm length: 848
Alignm identity: 641
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 235

Show alignments to all cow chromosomes.