Cow genome map

Conread name: Ss1.1-Utr1-UTR010038D04.5

Conread position: 478-747
Cow position: chr17:31856580-31856875 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 105, 12

Conread position: 482-716
Cow position: chr17:21755517-21755267 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 124, 103

Conread position: 484-745
Cow position: chr17:29025982-29026276 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 485-615
Cow position: chr17:1353314-1353444 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 95, 79

Conread position: 487-615
Cow position: chr17:21959769-21959641 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 490-615
Cow position: chr17:21628400-21628526 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 490-623
Cow position: chr17:21293120-21292987 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 84, 65

Conread position: 490-703
Cow position: chr17:267664-267452 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 98, 64

Conread position: 490-786
Cow position: chr17:30359394-30359698 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 55

Conread position: 490-787
Cow position: chr17:923799-924103 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 93, 41

Conread position: 491-693
Cow position: chr17:32017958-32017749 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 491-747
Cow position: chr17:21363333-21363588 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 132, 51

Conread position: 491-747
Cow position: chr17:25189209-25189493 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 84, 0

Conread position: 491-748
Cow position: chr17:1783682-1783422 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 90, 41

Conread position: 491-754
Cow position: chr17:1035676-1035383 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 208
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 86, 0

Conread position: 492-615
Cow position: chr17:3471343-3471466 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 492-615
Cow position: chr17:40741570-40741695 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 492-620
Cow position: chr17:11921359-11921222 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 492-623
Cow position: chr17:28539952-28540085 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 0

Conread position: 492-704
Cow position: chr17:27203121-27202894 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 130, 91

Conread position: 492-714
Cow position: chr17:5895987-5895769 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 84, 33

Conread position: 492-714
Cow position: chr17:27048082-27048320 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 130, 29

Conread position: 492-716
Cow position: chr17:20993117-20992876 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 184
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 84, 0

Conread position: 492-718
Cow position: chr17:8690519-8690284 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 87, 0

Conread position: 492-736
Cow position: chr17:6624181-6624421 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 81, 51

Conread position: 492-745
Cow position: chr17:40771759-40772031 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 81, 181

Conread position: 492-746
Cow position: chr17:2275397-2275667 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 62, 84

Conread position: 492-747
Cow position: chr17:20848445-20848727 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 88, 61

Conread position: 492-763
Cow position: chr17:18860800-18860519 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 93, 188

Conread position: 492-786
Cow position: chr17:21489701-21489385 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 304

Conread position: 492-787
Cow position: chr17:24077326-24077640 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 493-615
Cow position: chr17:1295647-1295524 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 493-615
Cow position: chr17:2839831-2839956 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 493-615
Cow position: chr17:20780434-20780556 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 493-615
Cow position: chr17:21312887-21312762 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 493-682
Cow position: chr17:31231188-31230991 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 124, 39

Conread position: 493-701
Cow position: chr17:30539329-30539119 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 86, 171

Conread position: 493-703
Cow position: chr17:6848729-6848947 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 132, 66

Conread position: 493-703
Cow position: chr17:9746438-9746665 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 89, 0

Conread position: 493-703
Cow position: chr17:21495300-21495524 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 88, 0

Conread position: 493-715
Cow position: chr17:18920426-18920205 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 98, 43

Conread position: 493-724
Cow position: chr17:979232-978991 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 113, 83

Conread position: 493-728
Cow position: chr17:17193417-17193665 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 38

Conread position: 493-741
Cow position: chr17:17682979-17682717 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 60, 90

Conread position: 493-747
Cow position: chr17:7142789-7143060 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 124, 58

Conread position: 493-747
Cow position: chr17:13143767-13143518 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 186
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 84, 135

Conread position: 493-747
Cow position: chr17:29292443-29292187 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 88, 164

Conread position: 493-747
Cow position: chr17:38363063-38362808 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 83, 221

Conread position: 493-748
Cow position: chr17:9853913-9854186 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 124, 26

Conread position: 493-774
Cow position: chr17:43717391-43717101 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 95, 61

Conread position: 493-787
Cow position: chr17:20234152-20234446 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 116, 94

Conread position: 494-703
Cow position: chr17:41029877-41030090 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 171
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 15, 70

Conread position: 494-746
Cow position: chr17:32348997-32349265 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 93, 60

Conread position: 494-747
Cow position: chr17:7654532-7654286 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 82, 159

Conread position: 494-747
Cow position: chr17:19999064-19999321 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 80, 32

Conread position: 494-747
Cow position: chr17:41290096-41289841 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 82, 44

Conread position: 494-760
Cow position: chr17:12220013-12219730 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 195
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 232

Conread position: 494-760
Cow position: chr17:25097387-25097669 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 80, 205

Conread position: 495-716
Cow position: chr17:20126538-20126762 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 107, 83

Conread position: 495-746
Cow position: chr17:23101283-23101020 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 182
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 80, 0

Conread position: 496-623
Cow position: chr17:2662349-2662479 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 496-747
Cow position: chr17:36791058-36791330 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 509-747
Cow position: chr17:11101861-11101615 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 134, 78

Conread position: 510-747
Cow position: chr17:2034472-2034702 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 76, 15

Conread position: 513-787
Cow position: chr17:9770454-9770746 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 68, 256

Conread position: 515-746
Cow position: chr17:33275805-33275557 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 57, 205

Conread position: 521-787
Cow position: chr17:25126303-25126590 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 90, 198

Conread position: 541-779
Cow position: chr17:27303987-27303735 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 66, 41

Conread position: 570-787
Cow position: chr17:22051573-22051350 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 14

Conread position: 578-787
Cow position: chr17:20881781-20881568 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 16

Conread position: 590-782
Cow position: chr17:35593187-35593373 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 602-771
Cow position: chr17:21619726-21619557 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 45, 7

Conread position: 605-787
Cow position: chr17:30107951-30108125 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 17

Conread position: 609-771
Cow position: chr17:1282199-1282031 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 96, 136

Conread position: 609-771
Cow position: chr17:5044273-5044106 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 96, 0

Conread position: 609-771
Cow position: chr17:18588143-18588305 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 98, 126

Conread position: 609-787
Cow position: chr17:24030173-24029987 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 618-745
Cow position: chr17:18776120-18775988 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 618-783
Cow position: chr17:19613314-19613154 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 5, 49

Conread position: 620-792
Cow position: chr17:44851189-44851011 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 74, 176

Conread position: 622-746
Cow position: chr17:21039629-21039758 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 622-748
Cow position: chr17:35457744-35457614 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 13, 66

Conread position: 622-754
Cow position: chr17:25122172-25122037 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 622-787
Cow position: chr17:11985806-11985635 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 155

Conread position: 624-771
Cow position: chr17:31985866-31985713 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 81, 16

Conread position: 627-747
Cow position: chr17:38736515-38736634 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 654-782
Cow position: chr17:18458577-18458710 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 51, 102

Show alignments to all cow chromosomes.