Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 473-784 |
| Cow position: | chr18:35367359-35367036 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 482-620 |
| Cow position: | chr18:42966704-42966844 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 94, 8 |
| Conread position: | 484-613 |
| Cow position: | chr18:19831146-19831281 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 487-612 |
| Cow position: | chr18:44026968-44027091 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 41 |
| Conread position: | 488-731 |
| Cow position: | chr18:36264924-36264667 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 93 |
| Conread position: | 490-615 |
| Cow position: | chr18:10861584-10861456 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 490-703 |
| Cow position: | chr18:31725030-31724811 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 490-745 |
| Cow position: | chr18:20174282-20174010 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 75, 224 |
| Conread position: | 490-747 |
| Cow position: | chr18:30341327-30341053 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 127, 88 |
| Conread position: | 490-753 |
| Cow position: | chr18:31672663-31672382 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 93, 71 |
| Conread position: | 490-787 |
| Cow position: | chr18:2151429-2151739 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 296 |
| Conread position: | 490-787 |
| Cow position: | chr18:7415179-7414857 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 87, 306 |
| Conread position: | 491-612 |
| Cow position: | chr18:33606479-33606601 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 491-715 |
| Cow position: | chr18:21102924-21102685 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 491-717 |
| Cow position: | chr18:51850710-51850472 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 81, 227 |
| Conread position: | 492-623 |
| Cow position: | chr18:6610009-6609877 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 492-676 |
| Cow position: | chr18:37363651-37363835 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 130, 66 |
| Conread position: | 492-684 |
| Cow position: | chr18:13359914-13360114 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 124, 15 |
| Conread position: | 492-715 |
| Cow position: | chr18:56159310-56159553 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 187 |
| Conread position: | 492-747 |
| Cow position: | chr18:20641641-20641372 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 492-747 |
| Cow position: | chr18:23821967-23821700 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 83, 43 |
| Conread position: | 492-748 |
| Cow position: | chr18:43555676-43555404 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 233 |
| Conread position: | 493-612 |
| Cow position: | chr18:47124555-47124673 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 493-615 |
| Cow position: | chr18:11166830-11166954 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 493-615 |
| Cow position: | chr18:15340597-15340471 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 493-703 |
| Cow position: | chr18:36458783-36459010 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 493-715 |
| Cow position: | chr18:21768481-21768705 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 493-715 |
| Cow position: | chr18:48453544-48453764 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 493-747 |
| Cow position: | chr18:247832-247568 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 106, 72 |
| Conread position: | 493-747 |
| Cow position: | chr18:9846547-9846290 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 82, 214 |
| Conread position: | 493-747 |
| Cow position: | chr18:30586370-30586107 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 88, 32 |
| Conread position: | 493-747 |
| Cow position: | chr18:49655556-49655810 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 132, 37 |
| Conread position: | 493-754 |
| Cow position: | chr18:51643516-51643232 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 85, 41 |
| Conread position: | 493-787 |
| Cow position: | chr18:11867190-11867515 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 494-701 |
| Cow position: | chr18:4666360-4666140 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 494-734 |
| Cow position: | chr18:9010572-9010821 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 62 |
| Conread position: | 494-746 |
| Cow position: | chr18:3066228-3066463 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 87, 68 |
| Conread position: | 494-748 |
| Cow position: | chr18:37023702-37023428 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 85, 244 |
| Conread position: | 494-779 |
| Cow position: | chr18:7649848-7650145 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 264 |
| Conread position: | 495-747 |
| Cow position: | chr18:26355174-26354912 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 130, 26 |
| Conread position: | 501-787 |
| Cow position: | chr18:48242047-48242348 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 88, 229 |
| Conread position: | 510-747 |
| Cow position: | chr18:51691596-51691335 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 515-703 |
| Cow position: | chr18:4490024-4489829 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 515-746 |
| Cow position: | chr18:51712829-51712590 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 520-712 |
| Cow position: | chr18:23162769-23162974 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 536-780 |
| Cow position: | chr18:46647256-46647001 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 538-748 |
| Cow position: | chr18:24759761-24759529 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 579-785 |
| Cow position: | chr18:16356529-16356319 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 126, 19 |
| Conread position: | 609-768 |
| Cow position: | chr18:56157242-56157076 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 609-771 |
| Cow position: | chr18:1793675-1793844 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 609-787 |
| Cow position: | chr18:33361140-33361319 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 95, 135 |
| Conread position: | 614-778 |
| Cow position: | chr18:912117-911954 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 96 |
| Conread position: | 617-747 |
| Cow position: | chr18:43014875-43014741 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 617-780 |
| Cow position: | chr18:24508239-24508062 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 618-748 |
| Cow position: | chr18:53642754-53642620 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 618-781 |
| Cow position: | chr18:10977217-10977043 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 620-778 |
| Cow position: | chr18:41271255-41271406 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 622-747 |
| Cow position: | chr18:5647811-5647937 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 622-747 |
| Cow position: | chr18:24719311-24719437 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 622-747 |
| Cow position: | chr18:50359330-50359454 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 96 |
| Conread position: | 622-760 |
| Cow position: | chr18:6867490-6867346 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 622-787 |
| Cow position: | chr18:3518264-3518433 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 623-778 |
| Cow position: | chr18:29390196-29390041 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 78, 96 |
| Conread position: | 623-787 |
| Cow position: | chr18:44206085-44205921 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 142 |
| Conread position: | 624-747 |
| Cow position: | chr18:56181455-56181330 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 625-795 |
| Cow position: | chr18:36501077-36500898 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 70, 91 |
| Conread position: | 635-778 |
| Cow position: | chr18:53560860-53561003 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 639-747 |
| Cow position: | chr18:19831597-19831704 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.