Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 483-746 |
| Cow position: | chr19:11191755-11191471 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 484-788 |
| Cow position: | chr19:55475470-55475762 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 136, 46 |
| Conread position: | 485-701 |
| Cow position: | chr19:37423405-37423192 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 140, 92 |
| Conread position: | 486-618 |
| Cow position: | chr19:35540161-35540293 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 490-615 |
| Cow position: | chr19:46918718-46918845 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 490-620 |
| Cow position: | chr19:51385828-51385699 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 490-694 |
| Cow position: | chr19:31595170-31595393 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 490-714 |
| Cow position: | chr19:53840392-53840631 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 126, 54 |
| Conread position: | 490-747 |
| Cow position: | chr19:2589377-2589668 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 491-614 |
| Cow position: | chr19:6417464-6417591 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 491-615 |
| Cow position: | chr19:39587653-39587530 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 491-703 |
| Cow position: | chr19:11424442-11424216 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 491-704 |
| Cow position: | chr19:53543021-53542797 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 105, 91 |
| Conread position: | 491-707 |
| Cow position: | chr19:25652883-25652653 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 491-715 |
| Cow position: | chr19:7404509-7404263 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 491-747 |
| Cow position: | chr19:5433685-5433427 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 159 |
| Conread position: | 491-747 |
| Cow position: | chr19:5913087-5912806 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 491-787 |
| Cow position: | chr19:32763277-32763551 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 90, 153 |
| Conread position: | 492-623 |
| Cow position: | chr19:14928785-14928653 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 80, 106 |
| Conread position: | 492-694 |
| Cow position: | chr19:43058407-43058618 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 126, 104 |
| Conread position: | 492-716 |
| Cow position: | chr19:4800613-4800856 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 493-615 |
| Cow position: | chr19:4511644-4511518 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 493-615 |
| Cow position: | chr19:35622230-35622353 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 83, 110 |
| Conread position: | 493-615 |
| Cow position: | chr19:38596491-38596613 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 98, 83 |
| Conread position: | 493-616 |
| Cow position: | chr19:2734322-2734446 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 493-618 |
| Cow position: | chr19:33932277-33932150 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 493-623 |
| Cow position: | chr19:20935625-20935757 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 493-634 |
| Cow position: | chr19:42205804-42205942 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 493-692 |
| Cow position: | chr19:38340108-38339891 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 493-694 |
| Cow position: | chr19:17273858-17273648 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 121, 89 |
| Conread position: | 493-714 |
| Cow position: | chr19:30551899-30552131 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 111, 60 |
| Conread position: | 493-715 |
| Cow position: | chr19:19919590-19919348 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 86, 211 |
| Conread position: | 493-715 |
| Cow position: | chr19:21790628-21790847 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 205, 63 |
| Conread position: | 493-716 |
| Cow position: | chr19:25807431-25807194 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 227 |
| Conread position: | 493-716 |
| Cow position: | chr19:50682568-50682330 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 125, 32 |
| Conread position: | 493-722 |
| Cow position: | chr19:22134273-22134031 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 125, 98 |
| Conread position: | 493-739 |
| Cow position: | chr19:1968433-1968178 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 493-745 |
| Cow position: | chr19:6079488-6079222 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 197 |
| Conread position: | 493-746 |
| Cow position: | chr19:47671621-47671883 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 226 |
| Conread position: | 493-747 |
| Cow position: | chr19:3812140-3811871 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 59 |
| Conread position: | 493-747 |
| Cow position: | chr19:46180943-46180709 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 493-768 |
| Cow position: | chr19:40051519-40051215 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 124, 56 |
| Conread position: | 493-780 |
| Cow position: | chr19:10242457-10242753 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 84, 64 |
| Conread position: | 494-615 |
| Cow position: | chr19:21043240-21043363 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 494-615 |
| Cow position: | chr19:52215036-52215156 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 494-627 |
| Cow position: | chr19:39361015-39361146 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 494-716 |
| Cow position: | chr19:47118623-47118381 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 227 |
| Conread position: | 494-745 |
| Cow position: | chr19:30471471-30471208 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 494-786 |
| Cow position: | chr19:23786065-23786365 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 71 |
| Conread position: | 494-787 |
| Cow position: | chr19:47773048-47772733 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 122, 43 |
| Conread position: | 495-747 |
| Cow position: | chr19:43721-43996 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 505-747 |
| Cow position: | chr19:13267309-13267055 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 192 |
| Conread position: | 509-771 |
| Cow position: | chr19:47986743-47987030 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 268 |
| Conread position: | 510-747 |
| Cow position: | chr19:13121385-13121135 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 48, 74 |
| Conread position: | 512-747 |
| Cow position: | chr19:12601702-12601953 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 546-715 |
| Cow position: | chr19:43372968-43373153 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 548-748 |
| Cow position: | chr19:33609836-33610042 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 578-704 |
| Cow position: | chr19:6509135-6509005 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 583-747 |
| Cow position: | chr19:32937840-32938010 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 600-783 |
| Cow position: | chr19:32666720-32666901 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 609-768 |
| Cow position: | chr19:17068096-17068255 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 50 |
| Conread position: | 609-768 |
| Cow position: | chr19:40658469-40658308 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 91, 145 |
| Conread position: | 612-746 |
| Cow position: | chr19:10554288-10554154 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 614-747 |
| Cow position: | chr19:39586098-39585953 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 621-746 |
| Cow position: | chr19:39613146-39613022 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 621-760 |
| Cow position: | chr19:6280513-6280655 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 621-800 |
| Cow position: | chr19:50849858-50850040 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 130 |
| Conread position: | 622-746 |
| Cow position: | chr19:21176721-21176596 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 622-747 |
| Cow position: | chr19:9573143-9573018 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 622-747 |
| Cow position: | chr19:26976047-26975920 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 622-780 |
| Cow position: | chr19:16870755-16870586 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 623-747 |
| Cow position: | chr19:43413804-43413930 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 625-747 |
| Cow position: | chr19:24224362-24224485 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.