Cow genome map

Conread name: Ss1.1-Utr1-UTR010038D04.5

Conread position: 473-703
Cow position: chr20:31311435-31311665 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 155
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 33, 143

Conread position: 484-612
Cow position: chr20:37357523-37357654 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 484-615
Cow position: chr20:5078116-5078247 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 485-784
Cow position: chr20:15569028-15568717 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 225
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 127, 76

Conread position: 486-620
Cow position: chr20:24000879-24000743 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 486-787
Cow position: chr20:17251634-17251967 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 233
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 90, 0

Conread position: 487-618
Cow position: chr20:23936488-23936352 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 487-704
Cow position: chr20:15565902-15565673 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 129, 30

Conread position: 487-787
Cow position: chr20:13652433-13652127 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 199
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 290

Conread position: 490-614
Cow position: chr20:40256893-40257018 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 490-620
Cow position: chr20:21714678-21714808 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 85, 124

Conread position: 490-740
Cow position: chr20:22484785-22485060 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 96, 0

Conread position: 490-781
Cow position: chr20:11188877-11188575 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 11, 96

Conread position: 491-615
Cow position: chr20:37272637-37272764 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 491-623
Cow position: chr20:33435243-33435107 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 491-715
Cow position: chr20:29844974-29845218 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 87, 43

Conread position: 491-716
Cow position: chr20:9537060-9537301 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 178
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 87, 0

Conread position: 491-742
Cow position: chr20:21928829-21929094 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 87, 75

Conread position: 491-747
Cow position: chr20:14759737-14759469 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 122, 84

Conread position: 491-747
Cow position: chr20:35192701-35192965 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 141, 88

Conread position: 491-787
Cow position: chr20:11359709-11359385 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 21, 0

Conread position: 492-615
Cow position: chr20:17904085-17904208 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 10

Conread position: 492-623
Cow position: chr20:9379334-9379463 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 492-623
Cow position: chr20:11482210-11482077 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 492-633
Cow position: chr20:11498436-11498576 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 85, 122

Conread position: 492-692
Cow position: chr20:35797533-35797754 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 492-702
Cow position: chr20:4621420-4621200 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 492-704
Cow position: chr20:6096569-6096339 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 125, 0

Conread position: 492-715
Cow position: chr20:19091195-19090970 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 113

Conread position: 492-715
Cow position: chr20:38551298-38551532 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 119, 200

Conread position: 492-736
Cow position: chr20:13967335-13967088 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 91, 163

Conread position: 492-747
Cow position: chr20:34221405-34221687 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 34

Conread position: 493-612
Cow position: chr20:34001467-34001343 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 493-623
Cow position: chr20:20312821-20312690 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 493-696
Cow position: chr20:10235781-10235979 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 107, 66

Conread position: 493-697
Cow position: chr20:15235694-15235901 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 127, 73

Conread position: 493-703
Cow position: chr20:5636409-5636636 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 124, 73

Conread position: 493-716
Cow position: chr20:18392335-18392102 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 122, 88

Conread position: 493-746
Cow position: chr20:7659293-7659022 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 493-747
Cow position: chr20:4334599-4334333 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 88, 60

Conread position: 493-747
Cow position: chr20:23103145-23103397 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 85, 128

Conread position: 493-747
Cow position: chr20:36741401-36741669 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 91, 0

Conread position: 493-780
Cow position: chr20:40303943-40303635 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 63

Conread position: 494-701
Cow position: chr20:33144626-33144400 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 494-702
Cow position: chr20:20983923-20984146 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 126, 82

Conread position: 494-703
Cow position: chr20:34108038-34108260 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 92, 112

Conread position: 494-747
Cow position: chr20:17470663-17470920 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 68, 181

Conread position: 494-758
Cow position: chr20:30817461-30817736 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 80, 177

Conread position: 494-781
Cow position: chr20:6602966-6603277 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 89, 232

Conread position: 495-703
Cow position: chr20:9473687-9473476 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 83, 157

Conread position: 495-714
Cow position: chr20:23064902-23064668 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 83, 12

Conread position: 495-747
Cow position: chr20:7442201-7441934 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 9, 86

Conread position: 496-747
Cow position: chr20:40726661-40726408 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 172
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 88, 195

Conread position: 497-715
Cow position: chr20:12085495-12085273 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 114, 211

Conread position: 498-624
Cow position: chr20:23506539-23506412 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 500-627
Cow position: chr20:21345360-21345490 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 509-787
Cow position: chr20:2298836-2298549 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 31, 171

Conread position: 510-746
Cow position: chr20:3254991-3255238 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 11

Conread position: 519-771
Cow position: chr20:5576169-5576426 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 170
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 70, 225

Conread position: 535-747
Cow position: chr20:13023526-13023297 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 52

Conread position: 600-760
Cow position: chr20:23633561-23633394 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 100, 0

Conread position: 600-771
Cow position: chr20:34467899-34467723 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 107, 0

Conread position: 609-787
Cow position: chr20:20720990-20720813 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 109

Conread position: 614-747
Cow position: chr20:5364992-5365134 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 622-746
Cow position: chr20:12581880-12581752 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 622-746
Cow position: chr20:20590227-20590100 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 622-768
Cow position: chr20:26387535-26387691 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 622-781
Cow position: chr20:9376544-9376710 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 127, 15

Conread position: 622-783
Cow position: chr20:32555364-32555525 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 127, 83

Conread position: 623-771
Cow position: chr20:15496875-15496728 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 624-781
Cow position: chr20:21941509-21941674 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 626-787
Cow position: chr20:11822556-11822722 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 79, 68

Show alignments to all cow chromosomes.