Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 482-782 |
| Cow position: | chr21:10823501-10823810 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 249 |
| Conread position: | 484-786 |
| Cow position: | chr21:977207-976876 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 68, 26 |
| Conread position: | 485-618 |
| Cow position: | chr21:6997878-6998013 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 485-623 |
| Cow position: | chr21:30607150-30607009 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 91, 16 |
| Conread position: | 487-615 |
| Cow position: | chr21:47363798-47363666 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 487-715 |
| Cow position: | chr21:4399743-4399992 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 490-612 |
| Cow position: | chr21:5455047-5454924 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 490-615 |
| Cow position: | chr21:17890246-17890372 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 490-754 |
| Cow position: | chr21:43240810-43241074 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 88, 73 |
| Conread position: | 490-787 |
| Cow position: | chr21:641529-641860 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 491-612 |
| Cow position: | chr21:23980236-23980115 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 491-623 |
| Cow position: | chr21:6833994-6834127 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 491-703 |
| Cow position: | chr21:24642464-24642688 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 92, 192 |
| Conread position: | 491-747 |
| Cow position: | chr21:45971227-45970953 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 491-787 |
| Cow position: | chr21:9416192-9416516 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 85, 230 |
| Conread position: | 492-620 |
| Cow position: | chr21:20418739-20418607 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 492-620 |
| Cow position: | chr21:42384455-42384583 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-634 |
| Cow position: | chr21:33360088-33359946 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 87, 136 |
| Conread position: | 492-706 |
| Cow position: | chr21:38268094-38267883 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 492-746 |
| Cow position: | chr21:37014457-37014200 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 207, 66 |
| Conread position: | 492-747 |
| Cow position: | chr21:14760519-14760783 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 492-747 |
| Cow position: | chr21:32339792-32339519 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 492-774 |
| Cow position: | chr21:1059023-1059320 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 492-780 |
| Cow position: | chr21:31253489-31253797 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 493-611 |
| Cow position: | chr21:34391029-34390909 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 493-615 |
| Cow position: | chr21:912021-911896 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 493-615 |
| Cow position: | chr21:6102313-6102191 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 493-615 |
| Cow position: | chr21:41878417-41878541 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 493-620 |
| Cow position: | chr21:2785830-2785701 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 60 |
| Conread position: | 493-716 |
| Cow position: | chr21:868979-868735 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 65 |
| Conread position: | 493-735 |
| Cow position: | chr21:32559413-32559158 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 493-747 |
| Cow position: | chr21:28244415-28244693 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 493-747 |
| Cow position: | chr21:38449501-38449226 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 493-747 |
| Cow position: | chr21:38900724-38900989 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 118, 65 |
| Conread position: | 493-758 |
| Cow position: | chr21:12462024-12461733 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 493-771 |
| Cow position: | chr21:82025-82318 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 493-780 |
| Cow position: | chr21:18041902-18041618 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 73 |
| Conread position: | 493-781 |
| Cow position: | chr21:15544272-15543970 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 123, 233 |
| Conread position: | 493-786 |
| Cow position: | chr21:20759989-20759698 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 217, 42 |
| Conread position: | 493-787 |
| Cow position: | chr21:27810354-27810661 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 131, 73 |
| Conread position: | 494-620 |
| Cow position: | chr21:28882082-28882212 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 494-623 |
| Cow position: | chr21:47764169-47764039 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 494-697 |
| Cow position: | chr21:28955454-28955671 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 494-703 |
| Cow position: | chr21:36795547-36795779 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 494-715 |
| Cow position: | chr21:33562961-33563190 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 121, 46 |
| Conread position: | 494-736 |
| Cow position: | chr21:45330000-45329739 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 494-744 |
| Cow position: | chr21:5898452-5898185 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 67 |
| Conread position: | 494-747 |
| Cow position: | chr21:10004940-10004657 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 495-701 |
| Cow position: | chr21:8235606-8235388 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 495-729 |
| Cow position: | chr21:15445125-15444882 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 135 |
| Conread position: | 495-780 |
| Cow position: | chr21:3236470-3236771 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 66, 207 |
| Conread position: | 496-747 |
| Cow position: | chr21:27521382-27521115 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 57 |
| Conread position: | 496-784 |
| Cow position: | chr21:29978810-29978504 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 501-784 |
| Cow position: | chr21:46973179-46972899 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 110, 81 |
| Conread position: | 510-780 |
| Cow position: | chr21:33791403-33791129 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 101, 78 |
| Conread position: | 513-778 |
| Cow position: | chr21:44861145-44860874 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 518-767 |
| Cow position: | chr21:8438853-8438601 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 108 |
| Conread position: | 518-787 |
| Cow position: | chr21:42905405-42905130 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 528-747 |
| Cow position: | chr21:742266-742500 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 587-747 |
| Cow position: | chr21:21158866-21159029 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 135 |
| Conread position: | 600-771 |
| Cow position: | chr21:34581616-34581450 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 609-760 |
| Cow position: | chr21:3016104-3015946 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 609-784 |
| Cow position: | chr21:4043612-4043794 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 614-754 |
| Cow position: | chr21:29418655-29418805 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 614-780 |
| Cow position: | chr21:2294110-2294275 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 617-747 |
| Cow position: | chr21:8351203-8351068 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 618-783 |
| Cow position: | chr21:40059120-40059286 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 150 |
| Conread position: | 622-747 |
| Cow position: | chr21:438657-438782 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 622-759 |
| Cow position: | chr21:13043926-13043788 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 128 |
| Conread position: | 622-768 |
| Cow position: | chr21:7768533-7768682 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 622-779 |
| Cow position: | chr21:30205278-30205127 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 622-780 |
| Cow position: | chr21:30031291-30031128 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 154 |
| Conread position: | 622-783 |
| Cow position: | chr21:15012534-15012700 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 157 |
| Conread position: | 626-760 |
| Cow position: | chr21:15414095-15413954 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 644-787 |
| Cow position: | chr21:30113862-30113712 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 654-771 |
| Cow position: | chr21:4177229-4177106 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.