Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 471-747 |
| Cow position: | chr24:27810023-27810289 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 483-615 |
| Cow position: | chr24:16625641-16625504 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 486-620 |
| Cow position: | chr24:19535400-19535269 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 486-703 |
| Cow position: | chr24:24662278-24662043 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 486-787 |
| Cow position: | chr24:11840037-11840370 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 38, 317 |
| Conread position: | 487-670 |
| Cow position: | chr24:30545007-30544810 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 128, 107 |
| Conread position: | 487-698 |
| Cow position: | chr24:40850016-40850234 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 129, 178 |
| Conread position: | 490-746 |
| Cow position: | chr24:27267489-27267750 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 130, 88 |
| Conread position: | 490-787 |
| Cow position: | chr24:27874457-27874757 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 127, 76 |
| Conread position: | 491-618 |
| Cow position: | chr24:30226798-30226925 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 491-624 |
| Cow position: | chr24:29595954-29595818 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 492-615 |
| Cow position: | chr24:43432650-43432773 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 96 |
| Conread position: | 492-619 |
| Cow position: | chr24:16509828-16509956 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 492-619 |
| Cow position: | chr24:40984020-40984149 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 492-623 |
| Cow position: | chr24:18970650-18970519 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-702 |
| Cow position: | chr24:43364217-43364445 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 81, 57 |
| Conread position: | 492-712 |
| Cow position: | chr24:6450354-6450588 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 187 |
| Conread position: | 492-715 |
| Cow position: | chr24:18390431-18390200 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 492-715 |
| Cow position: | chr24:24457388-24457150 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 55 |
| Conread position: | 492-716 |
| Cow position: | chr24:33944261-33944503 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 20 |
| Conread position: | 492-747 |
| Cow position: | chr24:38841546-38841295 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 105, 40 |
| Conread position: | 492-774 |
| Cow position: | chr24:17832956-17832655 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 492-780 |
| Cow position: | chr24:17955584-17955285 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 120, 90 |
| Conread position: | 492-786 |
| Cow position: | chr24:32054517-32054830 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 492-792 |
| Cow position: | chr24:35576677-35576349 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 47, 193 |
| Conread position: | 493-620 |
| Cow position: | chr24:34742613-34742739 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 493-702 |
| Cow position: | chr24:29170828-29171048 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 493-725 |
| Cow position: | chr24:32070824-32071072 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 493-747 |
| Cow position: | chr24:7777758-7777496 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 124, 55 |
| Conread position: | 493-747 |
| Cow position: | chr24:20943025-20943298 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 175 |
| Conread position: | 493-747 |
| Cow position: | chr24:27149253-27149522 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 9, 254 |
| Conread position: | 493-778 |
| Cow position: | chr24:34396316-34396012 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 230 |
| Conread position: | 493-781 |
| Cow position: | chr24:28553689-28553391 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 87, 33 |
| Conread position: | 493-781 |
| Cow position: | chr24:42825636-42825334 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 122, 85 |
| Conread position: | 493-784 |
| Cow position: | chr24:17104714-17104388 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 494-615 |
| Cow position: | chr24:40184486-40184606 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 13 |
| Conread position: | 494-623 |
| Cow position: | chr24:42007599-42007730 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 494-713 |
| Cow position: | chr24:15373268-15373504 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 126, 41 |
| Conread position: | 494-747 |
| Cow position: | chr24:19186821-19187070 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 88, 38 |
| Conread position: | 494-747 |
| Cow position: | chr24:38006846-38006574 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 126, 13 |
| Conread position: | 494-758 |
| Cow position: | chr24:7917503-7917231 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 147 |
| Conread position: | 495-615 |
| Cow position: | chr24:29360134-29360014 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 495-630 |
| Cow position: | chr24:17567246-17567382 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 508-746 |
| Cow position: | chr24:39523574-39523313 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 519-749 |
| Cow position: | chr24:16895247-16895007 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 6, 184 |
| Conread position: | 537-747 |
| Cow position: | chr24:25971150-25970946 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 569-779 |
| Cow position: | chr24:28355749-28355526 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 609-771 |
| Cow position: | chr24:15340461-15340294 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 617-787 |
| Cow position: | chr24:31383118-31383296 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 618-747 |
| Cow position: | chr24:32891042-32890909 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 618-747 |
| Cow position: | chr24:33098471-33098334 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 618-787 |
| Cow position: | chr24:26848731-26848558 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 163 |
| Conread position: | 622-736 |
| Cow position: | chr24:29984977-29984863 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 622-747 |
| Cow position: | chr24:16509984-16510110 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 622-747 |
| Cow position: | chr24:31816585-31816715 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 622-780 |
| Cow position: | chr24:27713398-27713230 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 622-792 |
| Cow position: | chr24:39960991-39960816 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 34 |
| Conread position: | 625-747 |
| Cow position: | chr24:27202098-27202223 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 626-765 |
| Cow position: | chr24:34768557-34768411 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 645-779 |
| Cow position: | chr24:25425060-25425195 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 102 |
Show alignments to all cow chromosomes.