Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 484-623 |
| Cow position: | chr25:36535565-36535421 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 485-618 |
| Cow position: | chr25:24504623-24504492 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 15 |
| Conread position: | 487-623 |
| Cow position: | chr25:38425236-38425373 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 487-781 |
| Cow position: | chr25:16400384-16400106 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 267, 30 |
| Conread position: | 489-623 |
| Cow position: | chr25:27801163-27801294 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 490-715 |
| Cow position: | chr25:13569293-13569051 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 126, 174 |
| Conread position: | 490-716 |
| Cow position: | chr25:21245725-21245482 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 89, 23 |
| Conread position: | 490-746 |
| Cow position: | chr25:23779444-23779174 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 84, 50 |
| Conread position: | 491-746 |
| Cow position: | chr25:12755612-12755332 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 69, 73 |
| Conread position: | 492-623 |
| Cow position: | chr25:9957160-9957026 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 492-623 |
| Cow position: | chr25:35625297-35625172 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 91, 21 |
| Conread position: | 492-742 |
| Cow position: | chr25:32277719-32277459 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 227 |
| Conread position: | 492-747 |
| Cow position: | chr25:17704633-17704899 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 102, 50 |
| Conread position: | 492-778 |
| Cow position: | chr25:26654789-26655092 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 84, 264 |
| Conread position: | 493-615 |
| Cow position: | chr25:31732455-31732332 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 85 |
| Conread position: | 493-615 |
| Cow position: | chr25:31732853-31732730 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 85 |
| Conread position: | 493-620 |
| Cow position: | chr25:16001644-16001516 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 493-623 |
| Cow position: | chr25:35333039-35333171 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 493-716 |
| Cow position: | chr25:38981983-38982217 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 493-747 |
| Cow position: | chr25:20008015-20008294 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 87, 66 |
| Conread position: | 493-747 |
| Cow position: | chr25:21893216-21893494 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 493-758 |
| Cow position: | chr25:7216711-7216987 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 86, 39 |
| Conread position: | 494-612 |
| Cow position: | chr25:18905767-18905886 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 494-615 |
| Cow position: | chr25:9961291-9961169 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 494-747 |
| Cow position: | chr25:7306183-7306450 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 70, 206 |
| Conread position: | 494-781 |
| Cow position: | chr25:13294785-13295066 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 159, 41 |
| Conread position: | 495-771 |
| Cow position: | chr25:20069606-20069906 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 123, 64 |
| Conread position: | 500-747 |
| Cow position: | chr25:40321410-40321134 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 502-615 |
| Cow position: | chr25:12252923-12252804 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 509-721 |
| Cow position: | chr25:35344927-35345135 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 73, 26 |
| Conread position: | 513-743 |
| Cow position: | chr25:30449942-30450191 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 517-747 |
| Cow position: | chr25:17724957-17725195 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 591-787 |
| Cow position: | chr25:24984416-24984219 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 113, 32 |
| Conread position: | 592-758 |
| Cow position: | chr25:26072562-26072393 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 126, 161 |
| Conread position: | 605-781 |
| Cow position: | chr25:2586183-2586359 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 609-771 |
| Cow position: | chr25:11373884-11373715 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 615-736 |
| Cow position: | chr25:6781884-6782009 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 620-787 |
| Cow position: | chr25:1284276-1284105 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 81, 68 |
| Conread position: | 622-780 |
| Cow position: | chr25:18288740-18288568 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 623-746 |
| Cow position: | chr25:10817392-10817271 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 623-772 |
| Cow position: | chr25:18026287-18026132 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 71 |
| Conread position: | 623-779 |
| Cow position: | chr25:7380809-7380637 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 623-781 |
| Cow position: | chr25:8596440-8596276 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 78, 143 |
| Conread position: | 624-746 |
| Cow position: | chr25:9107493-9107371 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 624-792 |
| Cow position: | chr25:18721089-18720915 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 123, 76 |
| Conread position: | 636-781 |
| Cow position: | chr25:23769844-23769694 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 644-747 |
| Cow position: | chr25:26156727-26156625 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 644-772 |
| Cow position: | chr25:36785638-36785505 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.