Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 450-715 |
| Cow position: | chr29:18404278-18403996 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 482-615 |
| Cow position: | chr29:11489853-11489716 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 489-703 |
| Cow position: | chr29:11705000-11705222 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 87, 69 |
| Conread position: | 490-604 |
| Cow position: | chr29:31899092-31898977 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 490-703 |
| Cow position: | chr29:4194239-4194018 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 87, 138 |
| Conread position: | 490-715 |
| Cow position: | chr29:6844750-6844509 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 89, 67 |
| Conread position: | 490-747 |
| Cow position: | chr29:12626101-12625837 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 491-623 |
| Cow position: | chr29:1022174-1022308 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 491-703 |
| Cow position: | chr29:32799829-32799602 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 491-745 |
| Cow position: | chr29:41530726-41531010 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 216 |
| Conread position: | 491-747 |
| Cow position: | chr29:4085200-4085457 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 129, 44 |
| Conread position: | 491-747 |
| Cow position: | chr29:29057062-29057337 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 492-612 |
| Cow position: | chr29:16657570-16657695 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 492-614 |
| Cow position: | chr29:19428539-19428662 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 492-682 |
| Cow position: | chr29:94673-94480 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 492-684 |
| Cow position: | chr29:30188459-30188261 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 492-719 |
| Cow position: | chr29:4334608-4334844 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 492-747 |
| Cow position: | chr29:28979601-28979352 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 81, 52 |
| Conread position: | 492-747 |
| Cow position: | chr29:31926409-31926156 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 84, 194 |
| Conread position: | 492-779 |
| Cow position: | chr29:27858674-27858989 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 86, 50 |
| Conread position: | 493-615 |
| Cow position: | chr29:13639489-13639363 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 65 |
| Conread position: | 493-615 |
| Cow position: | chr29:24952569-24952692 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 493-703 |
| Cow position: | chr29:43495935-43496150 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 38 |
| Conread position: | 493-747 |
| Cow position: | chr29:12025590-12025315 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 8, 184 |
| Conread position: | 493-747 |
| Cow position: | chr29:28195632-28195372 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 124, 89 |
| Conread position: | 493-747 |
| Cow position: | chr29:30227392-30227119 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 132, 85 |
| Conread position: | 493-748 |
| Cow position: | chr29:1395477-1395738 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 493-771 |
| Cow position: | chr29:707066-706781 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 494-615 |
| Cow position: | chr29:40615642-40615517 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 494-701 |
| Cow position: | chr29:27873482-27873709 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 494-747 |
| Cow position: | chr29:10653227-10653483 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 495-634 |
| Cow position: | chr29:36183164-36183306 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 495-747 |
| Cow position: | chr29:2644420-2644160 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 85, 222 |
| Conread position: | 496-747 |
| Cow position: | chr29:34359918-34359665 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 497-703 |
| Cow position: | chr29:40583678-40583895 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 9 |
| Conread position: | 509-747 |
| Cow position: | chr29:8862581-8862338 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 95, 212 |
| Conread position: | 510-786 |
| Cow position: | chr29:32963454-32963730 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 112, 126 |
| Conread position: | 519-748 |
| Cow position: | chr29:42771556-42771794 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 39 |
| Conread position: | 524-745 |
| Cow position: | chr29:13486861-13487081 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 143 |
| Conread position: | 536-746 |
| Cow position: | chr29:7040920-7040708 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 165, 49 |
| Conread position: | 544-781 |
| Cow position: | chr29:109629-109874 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 577-733 |
| Cow position: | chr29:40791276-40791444 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 592-787 |
| Cow position: | chr29:4070623-4070830 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 602-768 |
| Cow position: | chr29:40889670-40889497 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 606-716 |
| Cow position: | chr29:934934-935044 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 101, 88 |
| Conread position: | 607-771 |
| Cow position: | chr29:10847053-10846880 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 609-774 |
| Cow position: | chr29:29645306-29645127 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 609-784 |
| Cow position: | chr29:21542222-21542042 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 618-746 |
| Cow position: | chr29:31981855-31981982 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 100 |
| Conread position: | 622-716 |
| Cow position: | chr29:33393707-33393802 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 622-746 |
| Cow position: | chr29:22723630-22723759 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 622-747 |
| Cow position: | chr29:4423410-4423289 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 623-771 |
| Cow position: | chr29:27487216-27487373 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 644-747 |
| Cow position: | chr29:29296445-29296549 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.