Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 482-615 |
| Cow position: | chr4:18107298-18107159 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 482-716 |
| Cow position: | chr4:19584581-19584822 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 487-787 |
| Cow position: | chr4:52779721-52780046 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 130, 271 |
| Conread position: | 488-756 |
| Cow position: | chr4:29291387-29291669 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 490-611 |
| Cow position: | chr4:54930548-54930424 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 490-623 |
| Cow position: | chr4:45367608-45367746 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 490-628 |
| Cow position: | chr4:26683547-26683686 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 490-715 |
| Cow position: | chr4:10056085-10056322 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 94, 71 |
| Conread position: | 490-727 |
| Cow position: | chr4:13941335-13941586 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 126, 35 |
| Conread position: | 490-785 |
| Cow position: | chr4:46597250-46597556 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 76, 253 |
| Conread position: | 491-618 |
| Cow position: | chr4:4321127-4321000 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 94, 108 |
| Conread position: | 491-623 |
| Cow position: | chr4:14919868-14920001 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 491-714 |
| Cow position: | chr4:25879271-25879507 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 491-716 |
| Cow position: | chr4:26400835-26401073 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 123, 90 |
| Conread position: | 491-787 |
| Cow position: | chr4:49794545-49794853 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 492-612 |
| Cow position: | chr4:5047463-5047344 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 492-615 |
| Cow position: | chr4:65538543-65538418 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 492-615 |
| Cow position: | chr4:65950529-65950654 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 492-624 |
| Cow position: | chr4:16881489-16881357 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-703 |
| Cow position: | chr4:37502694-37502917 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 492-736 |
| Cow position: | chr4:46456186-46455922 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 126, 93 |
| Conread position: | 492-746 |
| Cow position: | chr4:11897424-11897149 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 166 |
| Conread position: | 492-747 |
| Cow position: | chr4:12676679-12676949 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 492-783 |
| Cow position: | chr4:27276670-27276346 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 86, 15 |
| Conread position: | 492-788 |
| Cow position: | chr4:10016721-10016429 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 222, 50 |
| Conread position: | 493-615 |
| Cow position: | chr4:36577755-36577632 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 493-615 |
| Cow position: | chr4:48137786-48137911 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 493-623 |
| Cow position: | chr4:37620012-37619881 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 91 |
| Conread position: | 493-692 |
| Cow position: | chr4:2141620-2141830 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 493-703 |
| Cow position: | chr4:63459337-63459118 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 201 |
| Conread position: | 493-715 |
| Cow position: | chr4:49089663-49089904 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 493-716 |
| Cow position: | chr4:41301115-41300879 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 123, 94 |
| Conread position: | 493-721 |
| Cow position: | chr4:41186034-41185794 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 83, 56 |
| Conread position: | 493-735 |
| Cow position: | chr4:47348702-47348966 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 493-747 |
| Cow position: | chr4:10732098-10732374 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 493-747 |
| Cow position: | chr4:20147060-20147339 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 493-747 |
| Cow position: | chr4:61451111-61451372 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 60 |
| Conread position: | 493-756 |
| Cow position: | chr4:60897401-60897130 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 92, 225 |
| Conread position: | 493-760 |
| Cow position: | chr4:45073939-45074226 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 493-781 |
| Cow position: | chr4:13255963-13256264 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 125, 179 |
| Conread position: | 493-781 |
| Cow position: | chr4:45662634-45662319 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 493-784 |
| Cow position: | chr4:27632325-27632642 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 124, 85 |
| Conread position: | 493-787 |
| Cow position: | chr4:23847173-23846857 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 100, 211 |
| Conread position: | 494-614 |
| Cow position: | chr4:11671330-11671450 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 494-615 |
| Cow position: | chr4:53999633-53999511 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 90, 114 |
| Conread position: | 494-619 |
| Cow position: | chr4:32259968-32259842 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 22 |
| Conread position: | 494-716 |
| Cow position: | chr4:19322206-19321957 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 494-747 |
| Cow position: | chr4:63769722-63769989 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 494-780 |
| Cow position: | chr4:29384346-29384045 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 494-780 |
| Cow position: | chr4:36929193-36929488 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 91, 207 |
| Conread position: | 494-780 |
| Cow position: | chr4:53125994-53126293 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 123, 42 |
| Conread position: | 495-615 |
| Cow position: | chr4:45013287-45013167 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 495-673 |
| Cow position: | chr4:51739832-51739642 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 496-746 |
| Cow position: | chr4:16239272-16239016 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 108 |
| Conread position: | 497-703 |
| Cow position: | chr4:20798-21017 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 28 |
| Conread position: | 499-715 |
| Cow position: | chr4:22724985-22725208 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 88, 45 |
| Conread position: | 499-747 |
| Cow position: | chr4:44184230-44183966 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 115 |
| Conread position: | 505-747 |
| Cow position: | chr4:61066661-61066907 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 73, 210 |
| Conread position: | 510-615 |
| Cow position: | chr4:37935392-37935286 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 521-747 |
| Cow position: | chr4:23646943-23646716 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 90, 55 |
| Conread position: | 526-787 |
| Cow position: | chr4:45626715-45626438 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 90, 56 |
| Conread position: | 592-775 |
| Cow position: | chr4:34983506-34983319 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 609-771 |
| Cow position: | chr4:10410787-10410950 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 609-771 |
| Cow position: | chr4:17782939-17782771 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 96, 131 |
| Conread position: | 614-747 |
| Cow position: | chr4:40392832-40392965 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 87, 8 |
| Conread position: | 614-781 |
| Cow position: | chr4:59015604-59015777 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 128, 84 |
| Conread position: | 614-784 |
| Cow position: | chr4:56805192-56805363 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 618-743 |
| Cow position: | chr4:17790273-17790144 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 618-747 |
| Cow position: | chr4:8083779-8083654 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 88 |
| Conread position: | 621-746 |
| Cow position: | chr4:3268342-3268217 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 621-781 |
| Cow position: | chr4:61268214-61268375 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 100, 116 |
| Conread position: | 622-774 |
| Cow position: | chr4:22331148-22331310 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 622-779 |
| Cow position: | chr4:479768-479608 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 79, 152 |
| Conread position: | 622-780 |
| Cow position: | chr4:38999447-38999613 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 622-792 |
| Cow position: | chr4:13141073-13140903 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 159, 144 |
| Conread position: | 623-771 |
| Cow position: | chr4:20506781-20506638 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 623-771 |
| Cow position: | chr4:22127982-22127827 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 623-785 |
| Cow position: | chr4:12720151-12720316 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 132 |
| Conread position: | 624-790 |
| Cow position: | chr4:42231998-42231828 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 151 |
| Conread position: | 626-755 |
| Cow position: | chr4:22482353-22482482 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 123, 82 |
| Conread position: | 636-781 |
| Cow position: | chr4:27425749-27425899 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 636-787 |
| Cow position: | chr4:348387-348234 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 122 |
| Conread position: | 644-778 |
| Cow position: | chr4:25974028-25973889 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.