Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 469-707 |
| Cow position: | chr5:29860232-29860474 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 107, 9 |
| Conread position: | 482-615 |
| Cow position: | chr5:49685373-49685239 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 482-703 |
| Cow position: | chr5:458388-458626 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 483-703 |
| Cow position: | chr5:35145249-35145465 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 108, 22 |
| Conread position: | 483-747 |
| Cow position: | chr5:11668286-11667995 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 484-703 |
| Cow position: | chr5:47323363-47323600 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 12, 105 |
| Conread position: | 487-615 |
| Cow position: | chr5:61840094-61840220 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 487-707 |
| Cow position: | chr5:3639584-3639354 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 182 |
| Conread position: | 489-623 |
| Cow position: | chr5:55955811-55955948 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 490-615 |
| Cow position: | chr5:4032087-4031957 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 490-702 |
| Cow position: | chr5:13717662-13717434 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 76, 194 |
| Conread position: | 491-694 |
| Cow position: | chr5:21964193-21964398 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 151 |
| Conread position: | 491-703 |
| Cow position: | chr5:58144695-58144480 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 84, 135 |
| Conread position: | 491-715 |
| Cow position: | chr5:23678796-23678552 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 85, 199 |
| Conread position: | 491-719 |
| Cow position: | chr5:21040067-21039828 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 127, 70 |
| Conread position: | 491-787 |
| Cow position: | chr5:16938101-16937801 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 131, 66 |
| Conread position: | 492-623 |
| Cow position: | chr5:60448123-60448256 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 492-703 |
| Cow position: | chr5:43992229-43992462 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 492-747 |
| Cow position: | chr5:14550674-14550393 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 128, 74 |
| Conread position: | 492-747 |
| Cow position: | chr5:18289037-18289307 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 492-747 |
| Cow position: | chr5:50575692-50575958 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 165 |
| Conread position: | 492-747 |
| Cow position: | chr5:52165271-52164984 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 81, 171 |
| Conread position: | 493-614 |
| Cow position: | chr5:34115558-34115684 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 493-624 |
| Cow position: | chr5:7921492-7921363 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 493-681 |
| Cow position: | chr5:43738046-43737847 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 493-707 |
| Cow position: | chr5:44994130-44993906 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 493-715 |
| Cow position: | chr5:12709796-12710019 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 81, 126 |
| Conread position: | 493-715 |
| Cow position: | chr5:28324262-28324486 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 56, 111 |
| Conread position: | 493-715 |
| Cow position: | chr5:37377776-37378003 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 86, 28 |
| Conread position: | 493-736 |
| Cow position: | chr5:30276605-30276864 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 493-746 |
| Cow position: | chr5:6286516-6286261 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 107 |
| Conread position: | 493-747 |
| Cow position: | chr5:26990300-26990569 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 87, 191 |
| Conread position: | 493-747 |
| Cow position: | chr5:47696534-47696271 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 493-781 |
| Cow position: | chr5:72006946-72006650 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 221 |
| Conread position: | 493-794 |
| Cow position: | chr5:8024287-8023970 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 85, 222 |
| Conread position: | 493-806 |
| Cow position: | chr5:55176798-55177136 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 87, 168 |
| Conread position: | 494-615 |
| Cow position: | chr5:72287004-72286883 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 494-618 |
| Cow position: | chr5:29827958-29828081 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 494-742 |
| Cow position: | chr5:6683447-6683193 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 231 |
| Conread position: | 494-783 |
| Cow position: | chr5:26262763-26262451 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 97, 13 |
| Conread position: | 496-746 |
| Cow position: | chr5:26097207-26097478 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 105, 43 |
| Conread position: | 496-747 |
| Cow position: | chr5:57527007-57526738 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 99, 181 |
| Conread position: | 498-692 |
| Cow position: | chr5:28927676-28927467 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 501-714 |
| Cow position: | chr5:34300832-34301066 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 505-733 |
| Cow position: | chr5:17602278-17602030 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 505-747 |
| Cow position: | chr5:29060999-29060750 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 509-747 |
| Cow position: | chr5:19752229-19752490 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 509-781 |
| Cow position: | chr5:30805092-30805382 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 510-715 |
| Cow position: | chr5:1165099-1165316 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 187 |
| Conread position: | 510-725 |
| Cow position: | chr5:57994939-57994718 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 91, 9 |
| Conread position: | 510-746 |
| Cow position: | chr5:56028602-56028357 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 514-747 |
| Cow position: | chr5:44848091-44847838 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 205 |
| Conread position: | 516-746 |
| Cow position: | chr5:55796033-55795782 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 517-747 |
| Cow position: | chr5:29895126-29895360 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 44 |
| Conread position: | 525-716 |
| Cow position: | chr5:63059009-63059211 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 195 |
| Conread position: | 527-768 |
| Cow position: | chr5:29515554-29515305 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 192 |
| Conread position: | 528-748 |
| Cow position: | chr5:63627582-63627345 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 569-779 |
| Cow position: | chr5:62172412-62172628 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 131 |
| Conread position: | 606-778 |
| Cow position: | chr5:694901-695083 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 146 |
| Conread position: | 606-787 |
| Cow position: | chr5:57074291-57074100 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 5, 11 |
| Conread position: | 609-745 |
| Cow position: | chr5:45436452-45436309 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 609-768 |
| Cow position: | chr5:56463104-56463263 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 124 |
| Conread position: | 609-771 |
| Cow position: | chr5:49183194-49183363 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 609-775 |
| Cow position: | chr5:9352554-9352727 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 609-785 |
| Cow position: | chr5:12874979-12874797 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 609-790 |
| Cow position: | chr5:29010300-29010489 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 612-780 |
| Cow position: | chr5:32731363-32731189 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 129 |
| Conread position: | 614-747 |
| Cow position: | chr5:36822932-36823061 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 617-746 |
| Cow position: | chr5:5016477-5016609 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 618-784 |
| Cow position: | chr5:16668749-16668920 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 621-736 |
| Cow position: | chr5:29979902-29979786 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 622-747 |
| Cow position: | chr5:4280505-4280633 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 622-787 |
| Cow position: | chr5:50943100-50942933 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 129 |
| Conread position: | 623-771 |
| Cow position: | chr5:59511414-59511259 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 627-781 |
| Cow position: | chr5:65679911-65679748 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 627-782 |
| Cow position: | chr5:21003375-21003532 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 644-771 |
| Cow position: | chr5:41628586-41628455 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 648-776 |
| Cow position: | chr5:22898226-22898092 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.