Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010038D04.5 |
| Conread position: | 484-715 |
| Cow position: | chr6:14839110-14838881 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 92, 26 |
| Conread position: | 485-754 |
| Cow position: | chr6:65264624-65264341 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 97 |
| Conread position: | 486-703 |
| Cow position: | chr6:42565604-42565839 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 105 |
| Conread position: | 486-711 |
| Cow position: | chr6:44061318-44061554 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 487-707 |
| Cow position: | chr6:12845301-12845535 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 77, 175 |
| Conread position: | 490-613 |
| Cow position: | chr6:59108864-59108989 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 100 |
| Conread position: | 490-615 |
| Cow position: | chr6:34075946-34076075 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 490-747 |
| Cow position: | chr6:61644913-61644654 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 212, 114 |
| Conread position: | 490-782 |
| Cow position: | chr6:67281816-67282128 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 491-690 |
| Cow position: | chr6:38614736-38614951 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 491-715 |
| Cow position: | chr6:51674833-51675071 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 127, 67 |
| Conread position: | 491-747 |
| Cow position: | chr6:33302331-33302598 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 75, 135 |
| Conread position: | 491-758 |
| Cow position: | chr6:19012987-19013270 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 491-780 |
| Cow position: | chr6:36470646-36470334 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 87, 236 |
| Conread position: | 492-608 |
| Cow position: | chr6:53731443-53731563 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 492-614 |
| Cow position: | chr6:6673025-6673147 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 97 |
| Conread position: | 492-623 |
| Cow position: | chr6:12629946-12630075 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 492-694 |
| Cow position: | chr6:4864627-4864404 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 492-696 |
| Cow position: | chr6:49002812-49002595 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 492-703 |
| Cow position: | chr6:68049358-68049569 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 93, 50 |
| Conread position: | 492-706 |
| Cow position: | chr6:12500783-12501004 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 121, 48 |
| Conread position: | 492-746 |
| Cow position: | chr6:31847299-31847043 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 115, 83 |
| Conread position: | 492-748 |
| Cow position: | chr6:34475630-34475355 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 89, 71 |
| Conread position: | 492-779 |
| Cow position: | chr6:37149109-37149425 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 74, 295 |
| Conread position: | 492-780 |
| Cow position: | chr6:17997393-17997073 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 128, 50 |
| Conread position: | 492-785 |
| Cow position: | chr6:16288131-16287818 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 130, 93 |
| Conread position: | 493-612 |
| Cow position: | chr6:19351232-19351113 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 109 |
| Conread position: | 493-615 |
| Cow position: | chr6:44099009-44099133 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 493-617 |
| Cow position: | chr6:18968858-18968732 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 493-624 |
| Cow position: | chr6:62925075-62924943 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 493-712 |
| Cow position: | chr6:60667342-60667571 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 182 |
| Conread position: | 493-719 |
| Cow position: | chr6:67950875-67951118 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 39 |
| Conread position: | 493-767 |
| Cow position: | chr6:2623704-2623989 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 92, 108 |
| Conread position: | 493-781 |
| Cow position: | chr6:40032115-40032423 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 85, 55 |
| Conread position: | 493-784 |
| Cow position: | chr6:6067769-6067465 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 87, 55 |
| Conread position: | 493-787 |
| Cow position: | chr6:58370676-58370998 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 494-703 |
| Cow position: | chr6:45065092-45064865 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 494-703 |
| Cow position: | chr6:54867437-54867669 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 494-743 |
| Cow position: | chr6:40713577-40713311 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 131, 88 |
| Conread position: | 494-746 |
| Cow position: | chr6:67574329-67574591 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 494-747 |
| Cow position: | chr6:23402067-23401793 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 494-783 |
| Cow position: | chr6:10225717-10225410 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 495-694 |
| Cow position: | chr6:57405199-57404999 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 495-747 |
| Cow position: | chr6:60739940-60740212 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 496-768 |
| Cow position: | chr6:53519698-53519396 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 500-792 |
| Cow position: | chr6:57546291-57545976 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 80, 286 |
| Conread position: | 501-704 |
| Cow position: | chr6:35896409-35896200 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 80, 5 |
| Conread position: | 504-733 |
| Cow position: | chr6:24468458-24468211 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 507-716 |
| Cow position: | chr6:10224142-10224357 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 509-740 |
| Cow position: | chr6:19519339-19519562 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 192, 37 |
| Conread position: | 514-787 |
| Cow position: | chr6:6060624-6060324 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 48 |
| Conread position: | 517-784 |
| Cow position: | chr6:16352401-16352128 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 66, 201 |
| Conread position: | 519-747 |
| Cow position: | chr6:21736940-21736700 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 178 |
| Conread position: | 562-747 |
| Cow position: | chr6:27219169-27219368 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 573-779 |
| Cow position: | chr6:61575830-61576048 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 590-771 |
| Cow position: | chr6:67964015-67963828 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 600-748 |
| Cow position: | chr6:55449984-55450137 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 105, 17 |
| Conread position: | 606-771 |
| Cow position: | chr6:6850379-6850550 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 102, 34 |
| Conread position: | 610-771 |
| Cow position: | chr6:37129876-37129711 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 95, 144 |
| Conread position: | 612-785 |
| Cow position: | chr6:38645801-38645975 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 93, 161 |
| Conread position: | 613-772 |
| Cow position: | chr6:48278828-48278659 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 618-747 |
| Cow position: | chr6:15058442-15058577 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 618-747 |
| Cow position: | chr6:54127747-54127619 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 623-784 |
| Cow position: | chr6:19455329-19455498 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 627-747 |
| Cow position: | chr6:30825693-30825574 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 651-767 |
| Cow position: | chr6:14436629-14436513 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 55 |
Show alignments to all cow chromosomes.