Cow genome map

Conread name: Ss1.1-Utr1-UTR010038D04.5

Conread position: 483-612
Cow position: chrX:42759891-42760017 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 486-715
Cow position: chrX:25283112-25282887 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 87, 131

Conread position: 488-716
Cow position: chrX:46433395-46433643 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 240

Conread position: 490-615
Cow position: chrX:42874890-42875016 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 93, 0

Conread position: 490-623
Cow position: chrX:4515588-4515726 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 490-623
Cow position: chrX:36961549-36961682 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 490-623
Cow position: chrX:40567513-40567639 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 490-703
Cow position: chrX:151811-152039 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 68

Conread position: 490-716
Cow position: chrX:5872227-5872470 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 126, 58

Conread position: 490-747
Cow position: chrX:27228034-27228320 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 86, 96

Conread position: 491-623
Cow position: chrX:35681248-35681383 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 491-715
Cow position: chrX:16348661-16348421 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 86, 211

Conread position: 491-782
Cow position: chrX:23940121-23939839 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 135, 42

Conread position: 491-786
Cow position: chrX:38094614-38094293 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 233
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 85, 301

Conread position: 492-615
Cow position: chrX:28845739-28845866 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 492-618
Cow position: chrX:21593196-21593321 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 119

Conread position: 492-623
Cow position: chrX:11589679-11589547 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 492-715
Cow position: chrX:8797161-8797401 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 492-715
Cow position: chrX:13382238-13382477 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 85, 0

Conread position: 492-715
Cow position: chrX:42873302-42873537 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 128, 66

Conread position: 492-715
Cow position: chrX:42994525-42994739 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 86, 26

Conread position: 492-716
Cow position: chrX:22387334-22387097 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 125, 86

Conread position: 492-746
Cow position: chrX:6234544-6234292 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 91, 136

Conread position: 492-748
Cow position: chrX:32820938-32821211 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 89, 256

Conread position: 492-758
Cow position: chrX:27174904-27175201 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 204
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 493-615
Cow position: chrX:29680351-29680228 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 493-623
Cow position: chrX:34502831-34502961 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 493-693
Cow position: chrX:19003209-19003407 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 138
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 493-711
Cow position: chrX:5017505-5017275 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 186

Conread position: 493-715
Cow position: chrX:7718765-7718984 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 129, 42

Conread position: 493-715
Cow position: chrX:23514106-23513868 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 90, 203

Conread position: 493-715
Cow position: chrX:38654521-38654291 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 85, 20

Conread position: 493-732
Cow position: chrX:35542804-35543060 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 90, 73

Conread position: 493-736
Cow position: chrX:34837145-34836891 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 99, 31

Conread position: 493-746
Cow position: chrX:11656001-11656268 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 87, 0

Conread position: 493-746
Cow position: chrX:31436387-31436659 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 58

Conread position: 493-747
Cow position: chrX:23497759-23497506 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 89, 119

Conread position: 493-747
Cow position: chrX:29601921-29601638 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 84, 0

Conread position: 493-755
Cow position: chrX:36356024-36356304 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 89, 39

Conread position: 493-778
Cow position: chrX:30421020-30420736 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 129, 42

Conread position: 493-779
Cow position: chrX:1503247-1503539 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 197
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 80, 47

Conread position: 493-781
Cow position: chrX:35413529-35413828 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 211
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 49, 106

Conread position: 493-785
Cow position: chrX:161322-161632 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 215
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 91, 241

Conread position: 493-788
Cow position: chrX:17662684-17662380 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 209
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 132, 227

Conread position: 494-623
Cow position: chrX:21672466-21672595 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 494-623
Cow position: chrX:27394110-27393985 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 494-703
Cow position: chrX:9365765-9365537 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 82, 67

Conread position: 494-746
Cow position: chrX:38218620-38218903 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 81, 48

Conread position: 494-780
Cow position: chrX:4768653-4768950 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 206
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 91, 54

Conread position: 494-787
Cow position: chrX:11614610-11614914 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 257

Conread position: 495-612
Cow position: chrX:40647897-40648016 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 496-700
Cow position: chrX:917452-917232 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 121, 11

Conread position: 501-746
Cow position: chrX:41238434-41238172 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 85, 33

Conread position: 509-623
Cow position: chrX:38549372-38549486 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 509-760
Cow position: chrX:31252343-31252612 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 72, 158

Conread position: 516-747
Cow position: chrX:4109125-4109376 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 5

Conread position: 521-703
Cow position: chrX:6463548-6463737 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 38

Conread position: 523-767
Cow position: chrX:41862325-41862575 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 172
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 96, 47

Conread position: 526-725
Cow position: chrX:32978135-32977924 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 176

Conread position: 544-779
Cow position: chrX:25441570-25441325 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 34, 171

Conread position: 546-754
Cow position: chrX:22284671-22284882 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 32, 75

Conread position: 548-747
Cow position: chrX:23188814-23188598 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 559-787
Cow position: chrX:28923019-28923254 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 57, 164

Conread position: 592-747
Cow position: chrX:20151884-20152039 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 107, 128

Conread position: 609-771
Cow position: chrX:30042046-30041877 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 609-785
Cow position: chrX:13005349-13005165 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 609-785
Cow position: chrX:24277364-24277541 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 609-787
Cow position: chrX:40056172-40055987 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 614-715
Cow position: chrX:40355081-40355183 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 614-747
Cow position: chrX:1122497-1122355 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 614-747
Cow position: chrX:3860586-3860456 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 26, 74

Conread position: 618-746
Cow position: chrX:31442776-31442649 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 88

Conread position: 618-747
Cow position: chrX:3806735-3806869 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 618-747
Cow position: chrX:27415527-27415397 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 5, 19

Conread position: 618-747
Cow position: chrX:40543468-40543337 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 5, 64

Conread position: 618-747
Cow position: chrX:46068706-46068572 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 618-784
Cow position: chrX:42836234-42836412 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 619-785
Cow position: chrX:17525812-17525635 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 622-771
Cow position: chrX:13177418-13177260 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 622-787
Cow position: chrX:17966399-17966560 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 151, 0

Conread position: 622-787
Cow position: chrX:45968206-45968377 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 81, 0

Conread position: 624-747
Cow position: chrX:42331344-42331467 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 639-782
Cow position: chrX:36961791-36961944 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 70, 0

Conread position: 644-787
Cow position: chrX:42311744-42311892 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 57, 93

Conread position: 645-785
Cow position: chrX:21171-21318 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 0

Show alignments to all cow chromosomes.