Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010039C01.5 |
| Conread position: | 102-562 |
| Cow position: | chrX:30035515-30035993 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 77 |
| Conread position: | 106-327 |
| Cow position: | chrX:17790754-17790970 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 7, 182 |
| Conread position: | 106-327 |
| Cow position: | chrX:42417392-42417186 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 47 |
| Conread position: | 106-333 |
| Cow position: | chrX:31859793-31859570 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 106-558 |
| Cow position: | chrX:9514653-9515117 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 106-558 |
| Cow position: | chrX:26412148-26411689 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 106-558 |
| Cow position: | chrX:29149267-29149743 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 106-562 |
| Cow position: | chrX:40599068-40598598 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 106-575 |
| Cow position: | chrX:830653-831145 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 110-562 |
| Cow position: | chrX:12649587-12649123 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 112-337 |
| Cow position: | chrX:31204385-31204173 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 112-514 |
| Cow position: | chrX:26803441-26803033 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 292 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 116-537 |
| Cow position: | chrX:26464113-26463685 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 61 |
| Conread position: | 116-562 |
| Cow position: | chrX:42570199-42570646 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 133 |
| Conread position: | 122-326 |
| Cow position: | chrX:24394991-24394800 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 189-333 |
| Cow position: | chrX:15266928-15267071 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 118 |
| Conread position: | 202-562 |
| Cow position: | chrX:26888124-26887741 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 133, 100 |
| Conread position: | 324-563 |
| Cow position: | chrX:29919593-29919835 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 85, 190 |
| Conread position: | 332-562 |
| Cow position: | chrX:32978655-32978888 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 332-562 |
| Cow position: | chrX:37074774-37074997 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 332-741 |
| Cow position: | chrX:36090697-36090269 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 334-562 |
| Cow position: | chrX:25306494-25306720 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 128, 158 |
| Conread position: | 334-728 |
| Cow position: | chrX:48264902-48265301 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 162, 109 |
| Conread position: | 343-563 |
| Cow position: | chrX:42417118-42416907 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 343-581 |
| Cow position: | chrX:39861262-39861031 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 343-624 |
| Cow position: | chrX:47336063-47336346 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 124, 104 |
| Conread position: | 343-630 |
| Cow position: | chrX:45769473-45769760 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 343-741 |
| Cow position: | chrX:45893229-45892838 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 94, 69 |
| Conread position: | 346-638 |
| Cow position: | chrX:47331475-47331768 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 117, 101 |
| Conread position: | 352-582 |
| Cow position: | chrX:44117040-44117270 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 111, 89 |
| Conread position: | 382-562 |
| Cow position: | chrX:42467250-42467430 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 121 |
| Conread position: | 385-740 |
| Cow position: | chrX:48015881-48016247 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 82, 50 |
Show alignments to all cow chromosomes.