Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 568-746 |
| Cow position: | chr1:91852593-91852412 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 150 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 568-911 |
| Cow position: | chr1:8015937-8015567 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 571-724 |
| Cow position: | chr1:36891479-36891322 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr1:4448783-4448967 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr1:11059700-11059517 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr1:40203966-40204143 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 571-746 |
| Cow position: | chr1:45988075-45987904 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 571-746 |
| Cow position: | chr1:81152840-81152666 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 571-746 |
| Cow position: | chr1:93222339-93222165 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 142 |
| Conread position: | 571-746 |
| Cow position: | chr1:93736444-93736627 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 574-746 |
| Cow position: | chr1:79171196-79171020 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 147 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 577-703 |
| Cow position: | chr1:8942736-8942605 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 577-745 |
| Cow position: | chr1:60503157-60502984 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 577-746 |
| Cow position: | chr1:6482578-6482406 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 577-746 |
| Cow position: | chr1:72666091-72665926 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 578-746 |
| Cow position: | chr1:102649695-102649861 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 579-700 |
| Cow position: | chr1:78054649-78054770 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 83 |
| Conread position: | 579-731 |
| Cow position: | chr1:4309505-4309655 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 128, 12 |
| Conread position: | 579-736 |
| Cow position: | chr1:17654458-17654297 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 138 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-745 |
| Cow position: | chr1:57533338-57533503 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 18, 134 |
| Conread position: | 579-746 |
| Cow position: | chr1:66189596-66189424 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 19, 140 |
| Conread position: | 579-746 |
| Cow position: | chr1:67395587-67395754 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 579-746 |
| Cow position: | chr1:73085990-73085820 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 144 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 579-746 |
| Cow position: | chr1:82405675-82405842 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 70 |
| Conread position: | 579-746 |
| Cow position: | chr1:84314406-84314237 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 133, 21 |
| Conread position: | 579-746 |
| Cow position: | chr1:84793614-84793443 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-746 |
| Cow position: | chr1:94315492-94315326 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 19, 143 |
| Conread position: | 579-747 |
| Cow position: | chr1:27972598-27972776 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 579-755 |
| Cow position: | chr1:26993437-26993623 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 64 |
| Conread position: | 579-898 |
| Cow position: | chr1:39004956-39004598 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 227 |
| Conread position: | 579-909 |
| Cow position: | chr1:14765745-14765398 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 580-746 |
| Cow position: | chr1:89518099-89518266 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 580-746 |
| Cow position: | chr1:91668923-91669089 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 580-912 |
| Cow position: | chr1:95316936-95316587 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 581-746 |
| Cow position: | chr1:10574862-10574693 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 584-912 |
| Cow position: | chr1:71319162-71319498 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 591-745 |
| Cow position: | chr1:86406594-86406750 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 121, 48 |
| Conread position: | 591-912 |
| Cow position: | chr1:28783757-28783413 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 55 |
| Conread position: | 592-736 |
| Cow position: | chr1:21321887-21322030 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 115, 46 |
| Conread position: | 604-746 |
| Cow position: | chr1:71107726-71107867 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 625-746 |
| Cow position: | chr1:49797778-49797660 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 731-912 |
| Cow position: | chr1:84793431-84793236 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 184 |
| Conread position: | 735-852 |
| Cow position: | chr1:43223532-43223406 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 747-912 |
| Cow position: | chr1:102649889-102650066 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 128 |
| Conread position: | 748-912 |
| Cow position: | chr1:60502956-60502786 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 754-882 |
| Cow position: | chr1:40204181-40204318 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 754-888 |
| Cow position: | chr1:84314199-84314057 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 53 |
| Conread position: | 754-899 |
| Cow position: | chr1:3412833-3412990 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 755-912 |
| Cow position: | chr1:36891255-36891086 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.