Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 567-746 |
| Cow position: | chr11:36239135-36239318 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 571-675 |
| Cow position: | chr11:62399587-62399482 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 571-730 |
| Cow position: | chr11:57924697-57924858 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 24, 78 |
| Conread position: | 571-745 |
| Cow position: | chr11:44149332-44149157 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 571-745 |
| Cow position: | chr11:85710374-85710552 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 149 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr11:7437521-7437346 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 27, 149 |
| Conread position: | 571-746 |
| Cow position: | chr11:37008273-37008450 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 571-746 |
| Cow position: | chr11:68981785-68981964 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr11:82709713-82709538 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 149 |
| Conread position: | 571-748 |
| Cow position: | chr11:28243186-28243007 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 152 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 25, 168 |
| Conread position: | 571-754 |
| Cow position: | chr11:70794684-70794871 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 578-746 |
| Cow position: | chr11:5161985-5161812 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 578-746 |
| Cow position: | chr11:35428433-35428603 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 87 |
| Conread position: | 579-713 |
| Cow position: | chr11:9288975-9289110 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-718 |
| Cow position: | chr11:34295530-34295664 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 97 |
| Conread position: | 579-733 |
| Cow position: | chr11:33336543-33336703 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-746 |
| Cow position: | chr11:6054121-6053952 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 133, 21 |
| Conread position: | 579-746 |
| Cow position: | chr11:35734129-35734295 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-746 |
| Cow position: | chr11:60204671-60204504 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 579-746 |
| Cow position: | chr11:61518598-61518769 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-746 |
| Cow position: | chr11:73386190-73386356 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 19, 137 |
| Conread position: | 579-746 |
| Cow position: | chr11:76939475-76939309 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-746 |
| Cow position: | chr11:80806886-80807056 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-887 |
| Cow position: | chr11:35789975-35789651 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-903 |
| Cow position: | chr11:1926577-1926239 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 276 |
| Conread position: | 584-746 |
| Cow position: | chr11:38643587-38643421 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 585-745 |
| Cow position: | chr11:30544778-30544620 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 585-746 |
| Cow position: | chr11:35643256-35643408 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 588-746 |
| Cow position: | chr11:35649386-35649226 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 588-902 |
| Cow position: | chr11:4592979-4593318 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 124, 67 |
| Conread position: | 591-746 |
| Cow position: | chr11:8476667-8476825 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 747-896 |
| Cow position: | chr11:38643393-38643229 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 747-898 |
| Cow position: | chr11:76939281-76939117 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 747-911 |
| Cow position: | chr11:28242981-28242802 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 747-912 |
| Cow position: | chr11:36239346-36239515 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 754-852 |
| Cow position: | chr11:41753316-41753215 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 754-912 |
| Cow position: | chr11:37008488-37008653 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 755-911 |
| Cow position: | chr11:35428642-35428811 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 755-911 |
| Cow position: | chr11:71988907-71988750 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 96, 35 |
Show alignments to all cow chromosomes.