Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 571-675 |
| Cow position: | chr12:11935153-11935048 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 571-718 |
| Cow position: | chr12:2470320-2470172 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 142 |
| Conread position: | 571-746 |
| Cow position: | chr12:3588245-3588424 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr12:10353823-10354006 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr12:16913409-16913581 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 136, 17 |
| Conread position: | 571-746 |
| Cow position: | chr12:18708715-18708883 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 111, 24 |
| Conread position: | 571-746 |
| Cow position: | chr12:45178549-45178374 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 24, 135 |
| Conread position: | 571-747 |
| Cow position: | chr12:6268307-6268483 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 145 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 24, 135 |
| Conread position: | 574-733 |
| Cow position: | chr12:43617632-43617470 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 577-746 |
| Cow position: | chr12:44477103-44476948 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 578-721 |
| Cow position: | chr12:42980481-42980336 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 578-746 |
| Cow position: | chr12:4309172-4309344 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 578-746 |
| Cow position: | chr12:6069041-6068870 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 144 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 123 |
| Conread position: | 579-744 |
| Cow position: | chr12:39640429-39640257 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 579-745 |
| Cow position: | chr12:33561896-33561726 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 579-746 |
| Cow position: | chr12:18131703-18131866 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 19, 133 |
| Conread position: | 579-746 |
| Cow position: | chr12:25434199-25434034 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 579-746 |
| Cow position: | chr12:27729979-27729809 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 64 |
| Conread position: | 585-746 |
| Cow position: | chr12:10787704-10787536 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 591-682 |
| Cow position: | chr12:30271718-30271627 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 78 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 591-729 |
| Cow position: | chr12:8125725-8125866 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 591-746 |
| Cow position: | chr12:15743531-15743379 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 605-746 |
| Cow position: | chr12:12025588-12025445 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 107, 37 |
| Conread position: | 635-746 |
| Cow position: | chr12:34544378-34544264 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 746-908 |
| Cow position: | chr12:30921926-30921749 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 747-901 |
| Cow position: | chr12:36596842-36597008 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 747-903 |
| Cow position: | chr12:3588452-3588622 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 747-908 |
| Cow position: | chr12:12025417-12025241 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 747-912 |
| Cow position: | chr12:33561697-33561521 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 754-880 |
| Cow position: | chr12:10354044-10354185 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 754-912 |
| Cow position: | chr12:6068832-6068665 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 754-912 |
| Cow position: | chr12:6268520-6268687 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 149 |
| Conread position: | 755-912 |
| Cow position: | chr12:10787497-10787329 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 755-912 |
| Cow position: | chr12:27729770-27729601 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.