Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 571-745 |
| Cow position: | chr13:17170367-17170189 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr13:10798829-10798650 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr13:27108922-27108743 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 571-746 |
| Cow position: | chr13:32716058-32715885 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 571-747 |
| Cow position: | chr13:12765822-12766001 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 21, 65 |
| Conread position: | 571-747 |
| Cow position: | chr13:20704860-20704671 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 571-754 |
| Cow position: | chr13:822580-822768 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 154 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 574-699 |
| Cow position: | chr13:12771180-12771306 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 574-731 |
| Cow position: | chr13:18318318-18318165 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 574-746 |
| Cow position: | chr13:1421413-1421588 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 575-746 |
| Cow position: | chr13:12319793-12319626 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 578-746 |
| Cow position: | chr13:2335783-2335954 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 578-901 |
| Cow position: | chr13:1415013-1414665 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 210 |
| Conread position: | 579-679 |
| Cow position: | chr13:18201154-18201255 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 579-681 |
| Cow position: | chr13:25813255-25813153 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 579-690 |
| Cow position: | chr13:13759999-13760111 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-718 |
| Cow position: | chr13:49150933-49151076 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-746 |
| Cow position: | chr13:1234271-1234443 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-746 |
| Cow position: | chr13:22070853-22071024 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 145 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 579-746 |
| Cow position: | chr13:42125307-42125473 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-746 |
| Cow position: | chr13:54778982-54779150 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 142 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 579-746 |
| Cow position: | chr13:58157716-58157883 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 19, 137 |
| Conread position: | 579-893 |
| Cow position: | chr13:52217903-52218238 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 580-747 |
| Cow position: | chr13:17881931-17882110 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 171 |
| Conread position: | 585-733 |
| Cow position: | chr13:52442067-52442215 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 127 |
| Conread position: | 588-746 |
| Cow position: | chr13:26182716-26182882 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 604-713 |
| Cow position: | chr13:54325773-54325881 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 604-731 |
| Cow position: | chr13:28649443-28649565 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 627-912 |
| Cow position: | chr13:6309336-6309018 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 85, 11 |
| Conread position: | 743-894 |
| Cow position: | chr13:43360864-43361023 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 86 |
| Conread position: | 747-912 |
| Cow position: | chr13:15702719-15702896 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 754-869 |
| Cow position: | chr13:31494756-31494638 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 758-901 |
| Cow position: | chr13:36700883-36700741 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 51, 105 |
Show alignments to all cow chromosomes.