Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 524-746 |
| Cow position: | chr16:565066-564847 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 571-728 |
| Cow position: | chr16:32034320-32034476 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 24, 78 |
| Conread position: | 571-744 |
| Cow position: | chr16:33986081-33986258 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-745 |
| Cow position: | chr16:30680514-30680684 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 571-746 |
| Cow position: | chr16:3593327-3593152 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 127 |
| Conread position: | 571-746 |
| Cow position: | chr16:6083672-6083851 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 148 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 571-746 |
| Cow position: | chr16:9569945-9569770 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 571-746 |
| Cow position: | chr16:16429735-16429915 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 150 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 571-746 |
| Cow position: | chr16:19030857-19031028 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 27, 142 |
| Conread position: | 572-746 |
| Cow position: | chr16:20497050-20497234 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 574-733 |
| Cow position: | chr16:3930061-3929906 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 574-746 |
| Cow position: | chr16:34760440-34760620 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 578-745 |
| Cow position: | chr16:12525587-12525755 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 578-747 |
| Cow position: | chr16:11811018-11810836 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 579-718 |
| Cow position: | chr16:17756666-17756527 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 128, 21 |
| Conread position: | 579-733 |
| Cow position: | chr16:26791359-26791201 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-746 |
| Cow position: | chr16:17598031-17597865 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-746 |
| Cow position: | chr16:56872025-56872192 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 133, 12 |
| Conread position: | 579-912 |
| Cow position: | chr16:41581650-41581291 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 580-746 |
| Cow position: | chr16:13469012-13469185 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 581-746 |
| Cow position: | chr16:6087260-6087429 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 142 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 592-746 |
| Cow position: | chr16:25616359-25616204 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 122, 71 |
| Conread position: | 604-746 |
| Cow position: | chr16:16435916-16436057 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 604-746 |
| Cow position: | chr16:43165106-43164961 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 604-747 |
| Cow position: | chr16:35035909-35035754 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 748-911 |
| Cow position: | chr16:39220115-39219945 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 76 |
| Conread position: | 754-903 |
| Cow position: | chr16:33426535-33426372 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 754-912 |
| Cow position: | chr16:13469436-13469605 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 158 |
| Conread position: | 755-881 |
| Cow position: | chr16:6087468-6087606 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 758-912 |
| Cow position: | chr16:6083893-6084056 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 56, 153 |
Show alignments to all cow chromosomes.