Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 566-746 |
| Cow position: | chr2:46322001-46322181 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 26, 6 |
| Conread position: | 568-746 |
| Cow position: | chr2:20788468-20788650 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 568-746 |
| Cow position: | chr2:83204726-83204544 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 571-746 |
| Cow position: | chr2:5852084-5852263 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr2:47880895-47880721 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 27, 142 |
| Conread position: | 571-746 |
| Cow position: | chr2:69080811-69080638 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 571-746 |
| Cow position: | chr2:71235088-71235263 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 143 |
| Conread position: | 571-746 |
| Cow position: | chr2:74180458-74180277 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-746 |
| Cow position: | chr2:76034490-76034313 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 28, 80 |
| Conread position: | 574-746 |
| Cow position: | chr2:67759673-67759500 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 142 |
| Conread position: | 578-746 |
| Cow position: | chr2:69594267-69594094 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 147 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 578-852 |
| Cow position: | chr2:12302806-12303108 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 579-733 |
| Cow position: | chr2:44356416-44356569 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-746 |
| Cow position: | chr2:20865764-20865943 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-746 |
| Cow position: | chr2:36972839-36972668 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-746 |
| Cow position: | chr2:47178435-47178269 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 579-746 |
| Cow position: | chr2:58267831-58267666 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 579-746 |
| Cow position: | chr2:59057726-59057562 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 579-746 |
| Cow position: | chr2:69085816-69085982 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 16, 134 |
| Conread position: | 579-746 |
| Cow position: | chr2:69915446-69915613 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 135 |
| Conread position: | 579-746 |
| Cow position: | chr2:83217033-83216867 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 134 |
| Conread position: | 579-747 |
| Cow position: | chr2:47765386-47765566 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 581-746 |
| Cow position: | chr2:66060823-66060659 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 581-746 |
| Cow position: | chr2:68627087-68627251 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 17, 141 |
| Conread position: | 581-746 |
| Cow position: | chr2:69804147-69804310 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 584-895 |
| Cow position: | chr2:26508443-26508115 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 588-746 |
| Cow position: | chr2:15996798-15996958 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 6, 55 |
| Conread position: | 592-746 |
| Cow position: | chr2:76306799-76306645 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 32 |
| Conread position: | 604-898 |
| Cow position: | chr2:32959177-32958851 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 103, 256 |
| Conread position: | 609-746 |
| Cow position: | chr2:3436747-3436887 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 64 |
| Conread position: | 622-733 |
| Cow position: | chr2:49260298-49260188 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 635-746 |
| Cow position: | chr2:48975428-48975319 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 747-901 |
| Cow position: | chr2:3436914-3437083 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 747-912 |
| Cow position: | chr2:71501646-71501467 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 754-894 |
| Cow position: | chr2:46322219-46322367 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 765-912 |
| Cow position: | chr2:83204167-83204008 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.