Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 571-679 |
| Cow position: | chr21:8913690-8913581 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 571-733 |
| Cow position: | chr21:22054728-22054575 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 571-744 |
| Cow position: | chr21:15642235-15642408 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 27, 149 |
| Conread position: | 571-746 |
| Cow position: | chr21:8212297-8212124 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 571-746 |
| Cow position: | chr21:8907204-8907027 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 147 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 571-746 |
| Cow position: | chr21:14780133-14780312 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 150 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 571-746 |
| Cow position: | chr21:39277363-39277538 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 27, 157 |
| Conread position: | 571-746 |
| Cow position: | chr21:41442834-41443009 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 23, 143 |
| Conread position: | 571-754 |
| Cow position: | chr21:10838519-10838331 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 574-746 |
| Cow position: | chr21:9293564-9293393 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 141, 17 |
| Conread position: | 574-912 |
| Cow position: | chr21:10813938-10813565 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 577-732 |
| Cow position: | chr21:21564982-21565136 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 18, 113 |
| Conread position: | 578-746 |
| Cow position: | chr21:41506202-41506026 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 579-705 |
| Cow position: | chr21:19372399-19372523 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 16, 117 |
| Conread position: | 579-733 |
| Cow position: | chr21:25759943-25759785 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 579-746 |
| Cow position: | chr21:1269928-1270095 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 579-746 |
| Cow position: | chr21:11735045-11734874 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-746 |
| Cow position: | chr21:25818302-25818137 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 579-746 |
| Cow position: | chr21:32432389-32432563 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 582-912 |
| Cow position: | chr21:7125771-7125417 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 590-746 |
| Cow position: | chr21:18731379-18731221 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 137 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 594-745 |
| Cow position: | chr21:30090656-30090502 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 602-747 |
| Cow position: | chr21:39251087-39251236 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 603-747 |
| Cow position: | chr21:41838203-41838350 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 664-894 |
| Cow position: | chr21:32511377-32511119 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 729-902 |
| Cow position: | chr21:12907444-12907619 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 747-910 |
| Cow position: | chr21:21565178-21565352 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 747-910 |
| Cow position: | chr21:39736499-39736677 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 747-912 |
| Cow position: | chr21:8906999-8906824 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 165 |
| Conread position: | 754-901 |
| Cow position: | chr21:26576065-26576213 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 104 |
| Conread position: | 754-911 |
| Cow position: | chr21:14780350-14780508 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 116 |
Show alignments to all cow chromosomes.