Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 565-746 |
| Cow position: | chr24:4627595-4627417 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 144, 23 |
| Conread position: | 571-681 |
| Cow position: | chr24:42658330-42658220 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 571-746 |
| Cow position: | chr24:3639693-3639869 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 571-746 |
| Cow position: | chr24:5519670-5519850 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 571-912 |
| Cow position: | chr24:10435231-10434858 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 25, 271 |
| Conread position: | 574-731 |
| Cow position: | chr24:7875252-7875097 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 578-710 |
| Cow position: | chr24:22061748-22061615 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 578-746 |
| Cow position: | chr24:4653976-4653812 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 135 |
| Conread position: | 578-746 |
| Cow position: | chr24:39795604-39795441 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 579-730 |
| Cow position: | chr24:4611144-4610993 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 18, 89 |
| Conread position: | 579-746 |
| Cow position: | chr24:5561179-5561348 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 579-746 |
| Cow position: | chr24:8611338-8611174 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 579-746 |
| Cow position: | chr24:15940831-15940996 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 133, 15 |
| Conread position: | 579-746 |
| Cow position: | chr24:16893575-16893404 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-746 |
| Cow position: | chr24:28334783-28334951 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 13, 62 |
| Conread position: | 579-746 |
| Cow position: | chr24:33906231-33906062 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 579-746 |
| Cow position: | chr24:39176389-39176223 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 579-746 |
| Cow position: | chr24:40465654-40465488 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-746 |
| Cow position: | chr24:42968169-42968332 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 100 |
| Conread position: | 580-747 |
| Cow position: | chr24:6544819-6544639 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 581-744 |
| Cow position: | chr24:6953536-6953370 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 598-746 |
| Cow position: | chr24:28989643-28989793 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 103, 72 |
| Conread position: | 748-912 |
| Cow position: | chr24:8611145-8610966 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 749-912 |
| Cow position: | chr24:16893374-16893200 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 754-910 |
| Cow position: | chr24:28989831-28989993 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 139 |
| Conread position: | 754-912 |
| Cow position: | chr24:5561386-5561551 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 754-912 |
| Cow position: | chr24:28541575-28541741 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 755-887 |
| Cow position: | chr24:24159322-24159466 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 755-912 |
| Cow position: | chr24:28334989-28335158 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.