Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 558-746 |
| Cow position: | chr27:16477571-16477383 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 34, 146 |
| Conread position: | 571-718 |
| Cow position: | chr27:25503144-25503292 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 571-746 |
| Cow position: | chr27:22121281-22121458 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 151 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 571-746 |
| Cow position: | chr27:25342523-25342348 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 24, 149 |
| Conread position: | 571-747 |
| Cow position: | chr27:15471476-15471659 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 24, 131 |
| Conread position: | 571-747 |
| Cow position: | chr27:22335259-22335089 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 574-746 |
| Cow position: | chr27:6343256-6343429 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 121 |
| Conread position: | 575-857 |
| Cow position: | chr27:28002507-28002210 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 578-746 |
| Cow position: | chr27:6915641-6915812 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 579-691 |
| Cow position: | chr27:26593829-26593943 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-733 |
| Cow position: | chr27:15454824-15454985 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 579-746 |
| Cow position: | chr27:6029931-6029765 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 134 |
| Conread position: | 579-746 |
| Cow position: | chr27:18497716-18497886 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 145 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 579-746 |
| Cow position: | chr27:20831825-20831985 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 579-746 |
| Cow position: | chr27:29940159-29939993 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 579-746 |
| Cow position: | chr27:31551090-31551250 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 581-746 |
| Cow position: | chr27:13654354-13654189 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 17, 130 |
| Conread position: | 584-746 |
| Cow position: | chr27:28150646-28150812 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 588-732 |
| Cow position: | chr27:30357231-30357083 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 588-746 |
| Cow position: | chr27:7134379-7134224 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 593-733 |
| Cow position: | chr27:18736946-18736804 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 119, 49 |
| Conread position: | 602-747 |
| Cow position: | chr27:5417071-5416925 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 110, 81 |
| Conread position: | 604-746 |
| Cow position: | chr27:5169387-5169242 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 731-894 |
| Cow position: | chr27:6915824-6916002 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 731-908 |
| Cow position: | chr27:24722432-24722240 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 743-900 |
| Cow position: | chr27:15408473-15408302 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 747-898 |
| Cow position: | chr27:205144-205301 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 131 |
| Conread position: | 747-912 |
| Cow position: | chr27:30357049-30356870 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 168 |
| Conread position: | 755-910 |
| Cow position: | chr27:25503352-25503517 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 760-903 |
| Cow position: | chr27:31211660-31211511 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.