Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 570-746 |
| Cow position: | chr3:81577046-81576868 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 571-746 |
| Cow position: | chr3:30246060-30245881 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 571-746 |
| Cow position: | chr3:44569956-44569780 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 571-746 |
| Cow position: | chr3:48566259-48566080 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 571-746 |
| Cow position: | chr3:77014814-77014992 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 150 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 571-747 |
| Cow position: | chr3:81368017-81368197 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 24, 153 |
| Conread position: | 571-757 |
| Cow position: | chr3:13636303-13636493 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 574-687 |
| Cow position: | chr3:54325201-54325315 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 574-745 |
| Cow position: | chr3:2119626-2119451 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 579-746 |
| Cow position: | chr3:5641092-5640926 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-746 |
| Cow position: | chr3:6949978-6950144 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 579-746 |
| Cow position: | chr3:14578540-14578374 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 128, 19 |
| Conread position: | 579-746 |
| Cow position: | chr3:16175154-16174980 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-746 |
| Cow position: | chr3:23654629-23654462 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 19, 149 |
| Conread position: | 579-746 |
| Cow position: | chr3:24503263-24503423 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 579-746 |
| Cow position: | chr3:33158618-33158784 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-746 |
| Cow position: | chr3:45171183-45171349 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-746 |
| Cow position: | chr3:60494965-60494800 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 579-746 |
| Cow position: | chr3:67824059-67824226 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 135 |
| Conread position: | 579-747 |
| Cow position: | chr3:62569717-62569546 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 579-748 |
| Cow position: | chr3:23034759-23034929 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 93 |
| Conread position: | 579-903 |
| Cow position: | chr3:70485865-70485526 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 19, 265 |
| Conread position: | 582-747 |
| Cow position: | chr3:2085896-2085730 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 582-911 |
| Cow position: | chr3:68874865-68874504 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 351 |
| Conread position: | 588-746 |
| Cow position: | chr3:24156231-24156390 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 588-746 |
| Cow position: | chr3:38705786-38705627 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 592-693 |
| Cow position: | chr3:33682885-33682784 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 83 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 628-746 |
| Cow position: | chr3:32185722-32185604 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 747-904 |
| Cow position: | chr3:54325413-54325587 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 754-901 |
| Cow position: | chr3:48566042-48565882 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 758-909 |
| Cow position: | chr3:84149367-84149531 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.