Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 563-736 |
| Cow position: | chr5:49908449-49908271 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 6, 58 |
| Conread position: | 570-674 |
| Cow position: | chr5:11444016-11443913 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 570-746 |
| Cow position: | chr5:25483359-25483534 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 144 |
| Conread position: | 571-671 |
| Cow position: | chr5:64123061-64123162 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-692 |
| Cow position: | chr5:15604005-15604127 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 571-733 |
| Cow position: | chr5:19683598-19683432 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 571-734 |
| Cow position: | chr5:75409481-75409321 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 138, 16 |
| Conread position: | 571-745 |
| Cow position: | chr5:74617048-74616877 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 27, 146 |
| Conread position: | 571-746 |
| Cow position: | chr5:50995026-50994847 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 571-747 |
| Cow position: | chr5:44490610-44490786 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 84 |
| Conread position: | 571-910 |
| Cow position: | chr5:36405934-36405574 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 24, 115 |
| Conread position: | 571-911 |
| Cow position: | chr5:55170485-55170857 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 362 |
| Conread position: | 571-912 |
| Cow position: | chr5:32087380-32087746 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 574-746 |
| Cow position: | chr5:45143401-45143573 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 24, 139 |
| Conread position: | 578-746 |
| Cow position: | chr5:44061802-44061969 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 135 |
| Conread position: | 579-682 |
| Cow position: | chr5:14855736-14855840 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-704 |
| Cow position: | chr5:65147487-65147361 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 579-718 |
| Cow position: | chr5:34469905-34469768 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 579-733 |
| Cow position: | chr5:3713062-3712907 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-746 |
| Cow position: | chr5:22185774-22185608 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 142 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 579-746 |
| Cow position: | chr5:48047472-48047307 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 579-746 |
| Cow position: | chr5:48052361-48052195 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 579-746 |
| Cow position: | chr5:60124856-60125022 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 141 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 16, 134 |
| Conread position: | 579-746 |
| Cow position: | chr5:60916844-60916672 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-747 |
| Cow position: | chr5:33910669-33910830 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 579-747 |
| Cow position: | chr5:69122326-69122145 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 580-745 |
| Cow position: | chr5:13198584-13198759 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 580-746 |
| Cow position: | chr5:47724619-47724453 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 580-857 |
| Cow position: | chr5:46821353-46821643 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 581-744 |
| Cow position: | chr5:43156354-43156521 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 581-745 |
| Cow position: | chr5:8770910-8771080 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 581-746 |
| Cow position: | chr5:47491231-47491067 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 582-746 |
| Cow position: | chr5:21460161-21460315 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 584-708 |
| Cow position: | chr5:48250395-48250520 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 585-746 |
| Cow position: | chr5:20656876-20657036 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 588-746 |
| Cow position: | chr5:60182860-60183016 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 591-746 |
| Cow position: | chr5:47761748-47761595 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 591-912 |
| Cow position: | chr5:46730642-46730302 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 144, 128 |
| Conread position: | 604-746 |
| Cow position: | chr5:10883232-10883091 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 604-746 |
| Cow position: | chr5:33983459-33983319 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 604-746 |
| Cow position: | chr5:48506958-48507097 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 113 |
| Conread position: | 610-744 |
| Cow position: | chr5:65144219-65144087 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 624-731 |
| Cow position: | chr5:58447830-58447939 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 625-746 |
| Cow position: | chr5:14094933-14095053 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 747-894 |
| Cow position: | chr5:30555522-30555359 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 747-902 |
| Cow position: | chr5:11443769-11443611 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 747-903 |
| Cow position: | chr5:19683391-19683220 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 749-912 |
| Cow position: | chr5:14855979-14856154 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 11, 164 |
| Conread position: | 749-912 |
| Cow position: | chr5:55295675-55295852 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 11, 166 |
| Conread position: | 754-901 |
| Cow position: | chr5:48478550-48478395 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 754-912 |
| Cow position: | chr5:64123563-64123733 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 755-912 |
| Cow position: | chr5:58447998-58448164 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 148 |
Show alignments to all cow chromosomes.