Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 552-727 |
| Cow position: | chr6:35713917-35714092 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 46, 168 |
| Conread position: | 565-747 |
| Cow position: | chr6:27636368-27636184 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 27, 122 |
| Conread position: | 571-746 |
| Cow position: | chr6:6786889-6786716 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 27, 145 |
| Conread position: | 571-746 |
| Cow position: | chr6:50825647-50825468 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 571-747 |
| Cow position: | chr6:29690072-29690245 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 136, 27 |
| Conread position: | 571-747 |
| Cow position: | chr6:61211959-61211780 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 571-912 |
| Cow position: | chr6:63238136-63238507 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 327 |
| Conread position: | 577-746 |
| Cow position: | chr6:42098780-42098951 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 18, 107 |
| Conread position: | 578-746 |
| Cow position: | chr6:47159215-47159378 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 128 |
| Conread position: | 578-746 |
| Cow position: | chr6:54084600-54084433 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 135 |
| Conread position: | 578-912 |
| Cow position: | chr6:60373486-60373858 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 274 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 17, 216 |
| Conread position: | 579-681 |
| Cow position: | chr6:56674996-56674893 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-705 |
| Cow position: | chr6:53147995-53148120 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 579-741 |
| Cow position: | chr6:67424758-67424592 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-745 |
| Cow position: | chr6:49414148-49414315 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 579-746 |
| Cow position: | chr6:30021633-30021469 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 579-746 |
| Cow position: | chr6:32521326-32521496 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-746 |
| Cow position: | chr6:55462013-55461845 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 123 |
| Conread position: | 579-746 |
| Cow position: | chr6:68020051-68020219 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 579-747 |
| Cow position: | chr6:25627873-25627693 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 64 |
| Conread position: | 579-903 |
| Cow position: | chr6:39744038-39743698 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 580-857 |
| Cow position: | chr6:65305539-65305834 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 583-746 |
| Cow position: | chr6:49099626-49099464 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 585-732 |
| Cow position: | chr6:49932054-49931903 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 588-746 |
| Cow position: | chr6:61431533-61431694 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 592-746 |
| Cow position: | chr6:19711088-19710936 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 600-746 |
| Cow position: | chr6:26124999-26125147 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 609-746 |
| Cow position: | chr6:53570018-53570159 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 747-894 |
| Cow position: | chr6:61211753-61211595 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 747-911 |
| Cow position: | chr6:56674512-56674333 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 755-903 |
| Cow position: | chr6:68020252-68020405 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 758-902 |
| Cow position: | chr6:29690543-29690697 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.