Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 571-681 |
| Cow position: | chr9:6857148-6857040 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 571-746 |
| Cow position: | chr9:5064222-5064397 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 24, 149 |
| Conread position: | 571-746 |
| Cow position: | chr9:27304302-27304136 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 571-746 |
| Cow position: | chr9:44323262-44323436 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 27, 142 |
| Conread position: | 571-746 |
| Cow position: | chr9:52009598-52009772 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 27, 140 |
| Conread position: | 571-912 |
| Cow position: | chr9:10969379-10969757 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 576-746 |
| Cow position: | chr9:48518442-48518611 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 578-747 |
| Cow position: | chr9:32643143-32642971 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 147 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 579-700 |
| Cow position: | chr9:35191969-35192089 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 579-717 |
| Cow position: | chr9:15049759-15049899 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 579-718 |
| Cow position: | chr9:55752365-55752226 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 15, 127 |
| Conread position: | 579-746 |
| Cow position: | chr9:4961718-4961552 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 579-746 |
| Cow position: | chr9:38864060-38864228 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 579-746 |
| Cow position: | chr9:50464950-50464782 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 135 |
| Conread position: | 579-746 |
| Cow position: | chr9:50684270-50684099 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 16, 101 |
| Conread position: | 579-746 |
| Cow position: | chr9:58399577-58399411 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 579-747 |
| Cow position: | chr9:27372994-27372822 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 579-898 |
| Cow position: | chr9:26735061-26734716 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 19, 65 |
| Conread position: | 580-746 |
| Cow position: | chr9:21653156-21652991 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 132 |
| Conread position: | 580-746 |
| Cow position: | chr9:35183598-35183428 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 584-887 |
| Cow position: | chr9:4700864-4701190 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 588-746 |
| Cow position: | chr9:35836933-35837091 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 133, 52 |
| Conread position: | 596-710 |
| Cow position: | chr9:54385947-54386062 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 604-746 |
| Cow position: | chr9:21424795-21424651 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 108, 38 |
| Conread position: | 624-746 |
| Cow position: | chr9:28850391-28850513 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 743-912 |
| Cow position: | chr9:38864251-38864434 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 747-908 |
| Cow position: | chr9:35183400-35183225 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 168 |
| Conread position: | 747-912 |
| Cow position: | chr9:35191648-35191467 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 754-910 |
| Cow position: | chr9:27372785-27372618 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 61, 51 |
Show alignments to all cow chromosomes.