Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010040E01.5 |
| Conread position: | 571-747 |
| Cow position: | chrX:41387683-41387502 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 12, 71 |
| Conread position: | 571-898 |
| Cow position: | chrX:25190944-25190594 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 282 |
| Conread position: | 571-904 |
| Cow position: | chrX:34817696-34817338 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 27, 321 |
| Conread position: | 574-744 |
| Cow position: | chrX:39732171-39732002 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 21, 139 |
| Conread position: | 574-746 |
| Cow position: | chrX:7544930-7544754 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 578-746 |
| Cow position: | chrX:34805077-34804910 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 142 |
| Conread position: | 578-746 |
| Cow position: | chrX:47296560-47296730 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 579-744 |
| Cow position: | chrX:1181152-1181316 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 19, 133 |
| Conread position: | 579-744 |
| Cow position: | chrX:9342322-9342487 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 579-744 |
| Cow position: | chrX:26246503-26246340 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 579-744 |
| Cow position: | chrX:34814197-34814032 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 579-746 |
| Cow position: | chrX:32018547-32018716 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 135 |
| Conread position: | 579-746 |
| Cow position: | chrX:39205535-39205701 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 134 |
| Conread position: | 579-747 |
| Cow position: | chrX:15327697-15327875 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 580-747 |
| Cow position: | chrX:47777735-47777902 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 134, 7 |
| Conread position: | 581-746 |
| Cow position: | chrX:25200687-25200851 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 134 |
| Conread position: | 583-746 |
| Cow position: | chrX:47339703-47339867 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 60 |
| Conread position: | 604-728 |
| Cow position: | chrX:45472884-45473009 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 108, 34 |
| Conread position: | 604-746 |
| Cow position: | chrX:45001115-45000969 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 605-858 |
| Cow position: | chrX:45470260-45470533 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 107, 116 |
| Conread position: | 608-745 |
| Cow position: | chrX:45928064-45927924 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 629-746 |
| Cow position: | chrX:45632412-45632292 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 754-912 |
| Cow position: | chrX:47340044-47340213 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 758-902 |
| Cow position: | chrX:15327916-15328072 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.