Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010041E06.5 |
| Conread position: | 17-156 |
| Cow position: | chr1:51486334-51486483 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 17-174 |
| Cow position: | chr1:22454850-22455007 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 92, 29 |
| Conread position: | 17-178 |
| Cow position: | chr1:2415538-2415376 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 17-328 |
| Cow position: | chr1:72807898-72807578 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 86, 49 |
| Conread position: | 20-176 |
| Cow position: | chr1:27349477-27349629 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 23-322 |
| Cow position: | chr1:30029153-30028855 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 102 |
| Conread position: | 23-322 |
| Cow position: | chr1:31189296-31189588 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 24-139 |
| Cow position: | chr1:84773004-84773120 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 24-156 |
| Cow position: | chr1:82409142-82409009 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 24-159 |
| Cow position: | chr1:99544179-99544314 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-175 |
| Cow position: | chr1:52912393-52912245 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 24-179 |
| Cow position: | chr1:64588582-64588430 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 24-203 |
| Cow position: | chr1:7045356-7045177 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 85, 149 |
| Conread position: | 24-322 |
| Cow position: | chr1:88534595-88534299 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 96 |
| Conread position: | 24-323 |
| Cow position: | chr1:61692549-61692259 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 24-327 |
| Cow position: | chr1:82518571-82518268 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 79, 40 |
| Conread position: | 24-328 |
| Cow position: | chr1:86361580-86361888 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 132 |
| Conread position: | 24-478 |
| Cow position: | chr1:102553728-102554201 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 148, 168 |
| Conread position: | 24-522 |
| Cow position: | chr1:25889837-25889319 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 161 |
| Conread position: | 25-160 |
| Cow position: | chr1:22087602-22087736 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 117, 77 |
| Conread position: | 25-323 |
| Cow position: | chr1:21223719-21223420 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 95, 148 |
| Conread position: | 25-323 |
| Cow position: | chr1:69417359-69417064 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 147 |
| Conread position: | 25-324 |
| Cow position: | chr1:61731475-61731772 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 108, 148 |
| Conread position: | 25-329 |
| Cow position: | chr1:54367840-54367542 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 25-496 |
| Cow position: | chr1:44088269-44087804 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 327 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 275, 138 |
| Conread position: | 26-329 |
| Cow position: | chr1:78358956-78359259 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 83, 57 |
| Conread position: | 36-320 |
| Cow position: | chr1:42177993-42177711 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 73, 120 |
| Conread position: | 38-203 |
| Cow position: | chr1:23048478-23048643 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 71, 135 |
| Conread position: | 38-314 |
| Cow position: | chr1:23048719-23048998 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 71, 135 |
| Conread position: | 43-473 |
| Cow position: | chr1:74281119-74280674 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 36 |
| Conread position: | 52-446 |
| Cow position: | chr1:76704753-76704356 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 115 |
| Conread position: | 60-190 |
| Cow position: | chr1:72133402-72133531 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 81 |
| Conread position: | 82-492 |
| Cow position: | chr1:31592689-31593108 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 99 |
| Conread position: | 94-328 |
| Cow position: | chr1:76705962-76705730 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 105, 26 |
| Conread position: | 119-323 |
| Cow position: | chr1:72180782-72180983 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 90, 53 |
| Conread position: | 326-503 |
| Cow position: | chr1:82347471-82347294 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 135, 88 |
| Conread position: | 326-506 |
| Cow position: | chr1:21522531-21522712 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 90, 61 |
| Conread position: | 326-506 |
| Cow position: | chr1:23049034-23049215 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 326-506 |
| Cow position: | chr1:54367520-54367337 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 326-510 |
| Cow position: | chr1:71460204-71460020 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 73, 152 |
| Conread position: | 326-510 |
| Cow position: | chr1:76705707-76705520 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 326-510 |
| Cow position: | chr1:95078965-95078788 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 326-522 |
| Cow position: | chr1:88534271-88534072 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 73, 122 |
| Conread position: | 328-510 |
| Cow position: | chr1:52912087-52911902 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 340-482 |
| Cow position: | chr1:69417026-69416882 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 59, 38 |
| Conread position: | 366-506 |
| Cow position: | chr1:42177646-42177502 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 498-689 |
| Cow position: | chr1:69058702-69058893 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 102, 62 |
| Conread position: | 498-711 |
| Cow position: | chr1:76705462-76705243 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 102, 0 |
Show alignments to all cow chromosomes.