Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010041E06.5 |
| Conread position: | 17-144 |
| Cow position: | chr10:45093232-45093358 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 107 |
| Conread position: | 17-328 |
| Cow position: | chr10:34319338-34319025 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 17-506 |
| Cow position: | chr10:29068182-29068682 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 19-321 |
| Cow position: | chr10:44517090-44516786 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 90, 166 |
| Conread position: | 20-324 |
| Cow position: | chr10:10414457-10414752 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 179, 102 |
| Conread position: | 23-510 |
| Cow position: | chr10:20385326-20384831 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 151 |
| Conread position: | 23-510 |
| Cow position: | chr10:60488120-60488613 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 327 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 6, 93 |
| Conread position: | 24-174 |
| Cow position: | chr10:2076866-2076713 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 24-323 |
| Cow position: | chr10:21902660-21902367 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 100 |
| Conread position: | 24-323 |
| Cow position: | chr10:55284725-55285015 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 24-328 |
| Cow position: | chr10:41512302-41512003 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 85, 99 |
| Conread position: | 24-328 |
| Cow position: | chr10:49308221-49308523 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 197, 125 |
| Conread position: | 25-322 |
| Cow position: | chr10:46189328-46189615 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 25-322 |
| Cow position: | chr10:53322835-53322546 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 25-323 |
| Cow position: | chr10:15864291-15863999 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 184, 80 |
| Conread position: | 25-510 |
| Cow position: | chr10:24301083-24300606 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 343 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 26-174 |
| Cow position: | chr10:22842339-22842481 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 32-305 |
| Cow position: | chr10:3546433-3546162 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 124 |
| Conread position: | 32-334 |
| Cow position: | chr10:1356153-1355868 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 293, 71 |
| Conread position: | 40-503 |
| Cow position: | chr10:64467722-64467249 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 309 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 69, 143 |
| Conread position: | 81-328 |
| Cow position: | chr10:28892917-28892670 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 95-328 |
| Cow position: | chr10:8329221-8328997 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 110, 20 |
| Conread position: | 324-506 |
| Cow position: | chr10:49308544-49308729 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 73, 94 |
| Conread position: | 326-510 |
| Cow position: | chr10:10414779-10414964 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 102 |
| Conread position: | 326-513 |
| Cow position: | chr10:34319002-34318824 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 132, 46 |
| Conread position: | 326-522 |
| Cow position: | chr10:15863970-15863772 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 328-506 |
| Cow position: | chr10:14949797-14949979 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 330-502 |
| Cow position: | chr10:42656829-42657002 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 46 |
| Conread position: | 335-505 |
| Cow position: | chr10:41511740-41511573 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 52, 67 |
| Conread position: | 499-715 |
| Cow position: | chr10:15863727-15863506 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 102, 43 |
Show alignments to all cow chromosomes.