Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010041E06.5 |
| Conread position: | 15-166 |
| Cow position: | chr11:49077986-49077834 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 6 |
| Conread position: | 17-144 |
| Cow position: | chr11:60633234-60633109 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 18-267 |
| Cow position: | chr11:25178854-25179104 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 84, 138 |
| Conread position: | 23-308 |
| Cow position: | chr11:18107149-18106882 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 186, 8 |
| Conread position: | 23-328 |
| Cow position: | chr11:43318812-43318520 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 109, 76 |
| Conread position: | 24-143 |
| Cow position: | chr11:8893897-8894018 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 24-167 |
| Cow position: | chr11:3236494-3236639 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 24-322 |
| Cow position: | chr11:8249861-8249569 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 185, 148 |
| Conread position: | 24-505 |
| Cow position: | chr11:42427250-42427744 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 154 |
| Conread position: | 25-326 |
| Cow position: | chr11:17911408-17911108 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 8 |
| Conread position: | 25-328 |
| Cow position: | chr11:25392180-25392468 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 174, 57 |
| Conread position: | 25-329 |
| Cow position: | chr11:7684665-7684960 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 173, 139 |
| Conread position: | 25-434 |
| Cow position: | chr11:52658078-52657658 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 77, 149 |
| Conread position: | 25-510 |
| Cow position: | chr11:44505637-44506138 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 88 |
| Conread position: | 32-506 |
| Cow position: | chr11:65163459-65162975 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 77, 111 |
| Conread position: | 39-312 |
| Cow position: | chr11:37289626-37289359 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 119 |
| Conread position: | 55-166 |
| Cow position: | chr11:616491-616379 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 61-314 |
| Cow position: | chr11:72015178-72015429 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 65-328 |
| Cow position: | chr11:10864589-10864856 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 100-493 |
| Cow position: | chr11:21463376-21463776 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 326-492 |
| Cow position: | chr11:11676927-11677096 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 326-506 |
| Cow position: | chr11:37289310-37289130 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 326-510 |
| Cow position: | chr11:18106839-18106662 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 326-510 |
| Cow position: | chr11:84921163-84921349 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 77, 61 |
| Conread position: | 329-510 |
| Cow position: | chr11:25392494-25392678 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 70, 158 |
| Conread position: | 335-505 |
| Cow position: | chr11:7685750-7685921 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 335-510 |
| Cow position: | chr11:11123056-11123230 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 143 |
| Conread position: | 346-499 |
| Cow position: | chr11:81855611-81855457 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 493-685 |
| Cow position: | chr11:25392731-25392932 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 498-736 |
| Cow position: | chr11:26466847-26467086 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 502-689 |
| Cow position: | chr11:11123291-11123478 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 70, 84 |
| Conread position: | 916-1158 |
| Cow position: | chr11:11123908-11124140 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 181, 56 |
Show alignments to all cow chromosomes.